| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 729701 | NA (NA) | 12 (0.020) +G |
4/110 | NT | NA | pseudogene (113/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 729733 | NA (NA) | pseudogene (145/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 139 total aligned reads displayed.
GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCG > CP009273/729681‑729768 | gCCGGATAACCGTCTCGCCCGTGCCGAGCACGATCTTTACAGGGATGACCGTCACGGCAGGCTGACgg > 1:27756270/1‑68 (MQ=11)gCCGGATAACCGTATCGCCCGTGCCGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:37256344/1‑68 (MQ=18)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:36144667/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:30736060/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:38360093/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:298666/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:28678792/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:25823802/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:42816605/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:2536489/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:43631810/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:5053188/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:23341066/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:35048294/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:35555948/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:8669842/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGAAGGCTGagag > 1:3891479/1‑65 (MQ=0) ccGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg < 1:33564021/67‑1 (MQ=33) ccGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg < 1:25471445/67‑1 (MQ=33) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:1782756/1‑68 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:39743963/1‑68 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:40262458/1‑68 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGcaa > 1:42039329/1‑67 (MQ=25) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa < 1:29945311/68‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:13197692/67‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:5730806/67‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:8345528/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:2557879/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:4302115/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:14775421/1‑67 (MQ=35) aCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAcc > 1:30995634/1‑68 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGTGAAAACCg > 1:6657026/1‑67 (MQ=25) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:4959916/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:38842933/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:30015112/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:16726408/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:9208050/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:28601408/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:16218098/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:8175996/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:37499383/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:21728906/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:7720192/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:5899877/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:14572849/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:14763282/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:33377760/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:12805054/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:11346703/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGccc > 1:31053678/1‑67 (MQ=25) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:36060799/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:10126564/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:35739996/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:18649395/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:17880993/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:14026786/1‑67 (MQ=35) tCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTc < 1:30733211/68‑1 (MQ=35) cGCCCGTGCCGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:41238571/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGTCAGGCTGACGGAGAAAACCGACCTCa < 1:7407943/68‑1 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGCCCTCa > 1:20306266/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:39634578/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:38032921/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:7205603/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:9453002/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:36916921/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:14090361/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:15013289/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:24923651/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:32435398/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:25095306/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:27205828/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:25448592/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:22458148/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:20228774/1‑68 (MQ=35) tgccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:27950644/3‑67 (MQ=25) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:5897858/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:23115731/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:23451825/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:16752490/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:2636455/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:35288525/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:31877786/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:33807379/68‑1 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATcc < 1:43466159/68‑1 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc > 1:15175387/1‑67 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc < 1:6188223/67‑1 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc > 1:11256414/1‑67 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc > 1:24853753/1‑67 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc < 1:4245986/67‑1 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc < 1:35007703/67‑1 (MQ=35) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc > 1:36297427/1‑67 (MQ=35) cGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATccc < 1:25708523/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:2274114/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:6584889/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:6671252/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:21516866/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:2563511/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:32507811/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:11469720/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:36637973/68‑1 (MQ=35) | GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCG > CP009273/729681‑729768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |