| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 729701 | NA (NA) | 12 (0.020) +G |
4/110 | NT | NA | pseudogene (113/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 729733 | NA (NA) | pseudogene (145/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 489 total aligned reads displayed.
GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAGCGCAC > CP009273/729681‑729800 | gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:38360093/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:28678792/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:30167262/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGAAGGCTGagag > 1:3891479/1‑65 (MQ=0) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGgag < 1:28005847/68‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:13197692/67‑1 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:16726408/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:5899877/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:4959916/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:7720192/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:37499383/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:9208050/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:14807840/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:10126564/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:41564243/1‑67 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:34323650/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:36513990/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:35881354/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:27205828/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:25095306/1‑68 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:26825139/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:35288525/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:33807379/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:31877786/68‑1 (MQ=35) cccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGCCCTCAt > 1:39782916/1‑67 (MQ=25) ccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATc < 1:35007703/67‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:2563511/68‑1 (MQ=35) gTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCg < 1:6671252/68‑1 (MQ=35) cgcgCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGTAg > 1:32012054/1‑68 (MQ=25) cgcgCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAg > 1:32289643/1‑68 (MQ=35) cgcgCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAg > 1:43481323/1‑68 (MQ=35) cgcgCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAg > 1:12701975/1‑68 (MQ=35) gcgcACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAgg < 1:7292744/68‑1 (MQ=35) gcgcACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAgg < 1:2551206/68‑1 (MQ=35) gcgcACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAgg < 1:24055171/68‑1 (MQ=35) gcACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAgggg < 1:17224638/68‑1 (MQ=35) gcACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAgggg > 1:21659305/1‑68 (MQ=35) aCTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGtt > 1:14177782/1‑68 (MQ=35) aCTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGtt > 1:20016379/1‑68 (MQ=35) aCTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGtt > 1:5125654/1‑68 (MQ=35) tCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:31191277/40‑1 (MQ=40) tCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATcc > 1:39538928/1‑68 (MQ=35) tCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATcc > 1:34441238/1‑68 (MQ=35) tttACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGc > 1:14586859/1‑68 (MQ=35) ttACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCa < 1:31610568/68‑1 (MQ=35) tACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCAc > 1:42155041/1‑68 (MQ=35) tACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCAc > 1:40069658/1‑68 (MQ=35) tACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCAc > 1:42960754/1‑68 (MQ=35) tACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCAc > 1:23589678/1‑68 (MQ=35) tACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCAc > 1:30874211/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGTAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:1891234/1‑68 (MQ=25) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCCCgg > 1:6332404/1‑68 (MQ=25) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:9440737/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:16942309/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:8032418/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:42475106/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:38079200/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:12212011/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:11490810/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:11963438/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:42813560/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:22656479/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:23161402/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:24375232/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:24755955/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:5729752/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:26386793/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:20814095/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:20397800/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:28282722/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:43215898/1‑68 (MQ=35) ccGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACgg > 1:335944/1‑68 (MQ=35) cGGTATGACCGTCACGGCAGTCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:36950542/68‑1 (MQ=25) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGTACGga < 1:1906615/68‑1 (MQ=25) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGTACGga < 1:1855612/68‑1 (MQ=25) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:30714710/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:6933249/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:611165/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:40313684/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:18121007/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:21366435/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:29314289/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:25984809/68‑1 (MQ=35) cGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGga < 1:25336948/68‑1 (MQ=35) ggTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgat > 1:11083874/1‑68 (MQ=35) ggTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgat > 1:41099465/1‑68 (MQ=35) ggTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgat < 1:22170007/68‑1 (MQ=35) ggTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgat > 1:23659752/1‑68 (MQ=35) tATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgatga > 1:21226835/1‑68 (MQ=35) tATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGgatga > 1:15735922/1‑68 (MQ=35) tATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATACCGGAAGGGGTTATCCGCACGgatga > 1:8387365/1‑68 (MQ=255) ccGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:326988/1‑68 (MQ=35) ccGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:15093891/1‑68 (MQ=35) cGTCACGGCAGGCTGTCGGAGAAACCCGACCTCATCCCGGCAGGGGTTATCCGCACGGATGATGAgc > 1:37821947/1‑67 (MQ=11) cGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCGCGGATGATGAgc > 1:13766238/1‑67 (MQ=25) cGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:24955860/1‑67 (MQ=35) cGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:4457668/1‑67 (MQ=35) cGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:298912/1‑67 (MQ=35) cGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgc > 1:33069059/1‑67 (MQ=35) tCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAgcgc > 1:1779931/1‑67 (MQ=35) | GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACGGATGATGAGCGCAC > CP009273/729681‑729800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |