| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 84 (0.170) +GTT |
5/106 | NT | 12.4% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 629 (1.190) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 573 total aligned reads displayed.
TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCG > CP009273/776021‑776152 | tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTTGAATCCTGCACGACCCACCAATc < 1:30117935/68‑1 (MQ=14)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc > 1:16493360/1‑68 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:713710/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:6079145/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:14651442/68‑1 (MQ=31) aGTTGGTAGAGCAGTTGACATTTAATAAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc > 1:18773775/1‑66 (MQ=255) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCt < 1:13125600/66‑1 (MQ=37) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTaa > 1:35585625/1‑68 (MQ=40) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:10521465/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:34905348/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:36142740/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:39646649/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:30852173/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:5775188/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:7926096/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:7476523/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:11770858/1‑68 (MQ=255) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTgg > 1:10020453/1‑68 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:4446683/1‑68 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:32706579/1‑68 (MQ=255) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:17975442/1‑67 (MQ=255) aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGc > 1:1626034/1‑68 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:32099346/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:12189754/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:21116015/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:23532967/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:9679767/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:40127647/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt > 1:41263015/1‑68 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:29887096/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:29555883/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:22602823/68‑1 (MQ=255) gACTTTTAATCAATTGGTCGCATGTTCTAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgta < 1:18989614/68‑1 (MQ=255) cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgtag < 1:3448501/67‑1 (MQ=255) cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgtag < 1:12386107/67‑1 (MQ=255) tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTATAAGGTGGCCGCGgtagtca > 1:19730339/1‑66 (MQ=14) tttAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTaa > 1:4751518/1‑68 (MQ=255) tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTaaaa < 1:3522940/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAAc < 1:5348882/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAAc < 1:19432670/68‑1 (MQ=255) aaTCAATTGGTCGCAGGGTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAAc < 1:17776800/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt < 1:15696498/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt > 1:2809540/1‑68 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:42000340/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:39818209/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:23235758/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:8176675/68‑1 (MQ=255) cGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATaa < 1:18514531/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc < 1:22380653/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc > 1:40701017/1‑68 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:38888449/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:33361517/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAGTCTGTAAGGAGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGc > 1:37483441/1‑68 (MQ=25) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt < 1:24386914/66‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:17143847/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:37161770/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:2161185/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGc < 1:25184256/67‑1 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:33686273/1‑67 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:24949450/1‑67 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa < 1:41545168/67‑1 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:25820932/1‑67 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa > 1:38356625/1‑67 (MQ=255) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACTTTGCATGAGc < 1:21310145/68‑1 (MQ=255) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGc < 1:84848/68‑1 (MQ=255) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGc < 1:1370689/68‑1 (MQ=255) tCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGc > 1:2642530/1‑68 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCTTGAGCa > 1:42455858/1‑68 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa > 1:3312535/1‑68 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa > 1:20176964/1‑68 (MQ=255) ccTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa > 1:36598117/1‑68 (MQ=255) ccTGCACGACCCACCAATCGATAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCAAGAGCa > 1:43226373/1‑68 (MQ=255) tGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAAc < 1:31039794/68‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:30398747/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:8903556/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:27016643/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:22988121/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:15537399/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:16852153/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:41863794/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:14876399/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:20871332/1‑67 (MQ=255) cGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGcc < 1:37864575/68‑1 (MQ=255) cGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGcc < 1:11246304/68‑1 (MQ=255) aCCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCg > 1:28648887/1‑68 (MQ=255) accaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg < 1:22759730/68‑1 (MQ=255) accaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg < 1:26674648/68‑1 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:10798419/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:31773491/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:12829548/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:6847265/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:6483176/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:14175328/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:34252527/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:24095565/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:43445599/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:28866828/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:27819476/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:16032601/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:39225446/1‑68 (MQ=255) | TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCG > CP009273/776021‑776152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |