| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 84 (0.170) +GTT |
5/106 | NT | 12.4% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 629 (1.190) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 958 total aligned reads displayed.
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776334‑776467 | aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCg < 1:7011429/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:23454771/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:41419720/68‑1 (MQ=255) tCAATTGGTCGCAGGCTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:24292126/68‑1 (MQ=255) tGGTCTCAGTTTCTAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:38735809/68‑1 (MQ=17) tGGTCGCCGGGTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:35640051/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:32174959/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:23915611/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:22297851/68‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGAt < 1:34507640/67‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAAc < 1:21929755/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAAAATCCAAGACAGATGTTAAGCGGGTAGGATAAc > 1:37083445/1‑68 (MQ=14) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATTTTAAGCGTGTAGGATAACg < 1:33463780/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACg < 1:42728412/67‑1 (MQ=255) aTCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCa > 1:4832233/1‑67 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCa < 1:36066441/68‑1 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGGGTAGGATACCGTTGCGTAAGCa > 1:746860/1‑68 (MQ=18) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTTAGCAACgg < 1:5791251/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:15586501/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:30260479/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:37504847/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:17255672/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:25926590/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg < 1:21321860/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGGTAAGCGTTTAGGATAACGTTGCGTCAGCAACgg > 1:39541528/1‑67 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:36667565/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:26412645/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:4432524/68‑1 (MQ=255) gACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:14975125/67‑1 (MQ=255) aCCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCg > 1:23097807/1‑68 (MQ=255) cccACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGt > 1:17766971/1‑68 (MQ=255) accaGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAgg < 1:14234348/68‑1 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:29682143/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:32907161/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:16867458/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:1098520/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:25353325/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGAAGGATAACg > 1:27101483/1‑42 (MQ=255) aGTTTTAACATCGAAGACAGATCAAAATCTTCTAGCATAACGTTGATAAAGCAACGGCCCGTAGcgcg > 1:5542326/1‑68 (MQ=12) gTTTTAACATCGAAGACAGATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgat < 1:28982553‑M2/68‑43 (MQ=255) ttttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcga > 1:35171742/1‑67 (MQ=255) tttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcgagc > 1:41780335/1‑68 (MQ=255) aaCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaa < 1:26841145/68‑1 (MQ=255) aCATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaa > 1:20751968/1‑67 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:8064773/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:12657305/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:1953416/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:36452550/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:28339490/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:1525828/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc < 1:5174745/68‑1 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:31308337/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGAAGGGCGagcgaacc > 1:33861296/1‑66 (MQ=255) aTCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagcg > 1:777319/1‑68 (MQ=255) tCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:38074418/68‑1 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:38414600/1‑67 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:41043505/1‑67 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:13066755/1‑67 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCCAAGCGAGTCAt > 1:34094153/1‑67 (MQ=255) tagATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctc > 1:31759401‑M2/2‑10 (MQ=255) tatGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:24713689‑M2/2‑8 (MQ=255) tatGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:11611679‑M2/2‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:30415952‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:38990607‑M2/1‑8 (MQ=255) gATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt > 1:10610438/1‑67 (MQ=40) attgtTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:8557736‑M2/3‑8 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgcccaattgattaaaagtcaactgctcta < 1:18067987‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:28148230‑M2/67‑61 (MQ=255) aTGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGc > 1:13610539/1‑68 (MQ=40) tGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacc > 1:16074058‑M2/1‑6 (MQ=255) tGTTAAaactggtgggtcgtgcaggattcgaacctgc > 1:43136892‑M2/1‑6 (MQ=255) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:8325998/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:2727791/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:2568931/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:43341106/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:22578236/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:14598228/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:16401667/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATcc < 1:12259650/64‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:8905992/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:19826477/65‑1 (MQ=40) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:6044999‑M2/1‑5 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:31556028‑M2/1‑5 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:18893414‑M2/1‑5 (MQ=255) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:32521872/1‑68 (MQ=40) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:27586780/1‑68 (MQ=40) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAACCGAGTAATCATGCAc > 1:29333163/1‑68 (MQ=14) tAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACg > 1:30706257/1‑67 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCCACAGCCCGTAGGGCGAGCGAAGCGCGTCATCCTGCACGAc < 1:19092972/68‑1 (MQ=14) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:6438830/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:9428441/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:12016265/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:37801362/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:39905216/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:18421106/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGGCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:20306450/68‑1 (MQ=25) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:25185857/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:10009206/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:40526430/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:42282887/1‑67 (MQ=40) | TAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776334‑776467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |