| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 6 (0.010) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 758 total aligned reads displayed.
CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 | cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:36132638/1‑68 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:43435761‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:38510220‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:24922708‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:13073970‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:8252117‑M1/2‑1 (MQ=255) cccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAAt > 1:16570329/1‑67 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATg < 1:1122623/67‑1 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGc < 1:21370540/68‑1 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGc < 1:37464187/68‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:42966496‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:12233048‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:9301463‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGc > 1:24797817‑M1/65‑68 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:15278009‑M1/5‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:8557726‑M1/5‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:26429281‑M1/5‑1 (MQ=255) gtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCg < 1:40599036‑M1/6‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:3264369‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:3550381‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:19988386‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:40914855‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:23593650‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:4208484‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:25916675‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:39535553‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:33927510‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:17725236‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:3574939‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:38099340‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:1943995‑M1/7‑1 (MQ=255) tggttacaccgtcgatttaaaacacgcccggaaggcgttgattcacgctattaaatctcccAtgcctg < 1:15096199‑M1/7‑3 (MQ=255) ggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg > 1:25538598‑M1/61‑67 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:32982953/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:23063860/68‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:16997468‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:9022719‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:14777431‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:15886656‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:4690061‑M1/9‑1 (MQ=255) tacaccgtcccttcaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATGc > 1:20719091‑M1/58‑68 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:22694374/68‑1 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:27123538/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:39875384/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:5485763/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:20288316/1‑67 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:10318834/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:13915453/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:10068793/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:35181240/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCGGTGGTAATGCCGGATGCCAt < 1:38841451/66‑1 (MQ=255) ggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:3343919/1‑65 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCa < 1:7768040/68‑1 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCa < 1:34700871/68‑1 (MQ=255) aTCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCa < 1:42624800/68‑1 (MQ=255) tCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCa > 1:26927757/1‑67 (MQ=255) ccAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCAt > 1:5686341/1‑67 (MQ=255) gagCTTTTATCGCTAAATCAGGGTGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:41697765/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTTAAGCATCCgg < 1:15733525/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:36778354/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:25635096/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:29427875/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:31005901/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:30036154/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:6368872/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTATGAAGCATACGGCa > 1:31756511/1‑68 (MQ=255) gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATg > 1:3914016/1‑68 (MQ=255) gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATg > 1:12830965/1‑68 (MQ=255) ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATgg < 1:12624167/67‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:28773644/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:27759285/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:41226159/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:37240745/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:34447957/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:30313182/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:71942/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:2931097/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:13419797/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:14382561/68‑1 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:11592088/1‑68 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:7963699/1‑68 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:18096794/1‑68 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:6765328/1‑68 (MQ=255) tCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAtt > 1:1730064/1‑68 (MQ=255) atgaGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:1081699/65‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:22310038/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:18952824/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:18502716/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg < 1:40159142/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:2447722/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:32329042/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:5204128/1‑68 (MQ=255) acgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:9687351‑M1/51‑1 (MQ=255) gggTTTTGCTGTGGTAATTCCGGATGCCATTCTTTAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:25284111/67‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:2287092/67‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:28335062/67‑1 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:36430070/1‑68 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAg < 1:11781928/67‑1 (MQ=255) gCTGTGGGAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:22002788/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:19790349/1‑67 (MQ=255) | CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |