| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 6 (0.010) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 783 total aligned reads displayed.
GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111044‑1111177 | gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATg > 1:31176032/1‑68 (MQ=255) ttttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATggg < 1:1299763/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:29124398/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:13371686/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:34447957/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:37240745/68‑1 (MQ=255) ttATCGCAAAATCAGGGGGACTTGCTGGGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:39038708/68‑1 (MQ=255) atggCTAAATCAGGGGGTTTTGCTGTGGTAATGCCGGCTTCCTTTGTGTAGCATCCGGCATGGGAGAt < 1:11254643/65‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:10337036/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:22859778/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:24887256/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:30225940/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:17038115/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:15739575/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:14883260/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:38536076/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:40074665/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:6345115/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:8187811/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:31780022/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:12397016/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:21434477/68‑1 (MQ=255) ccttcacgctattaaatctcccatgccggatgcttcagaatggcatccggcatGGGAGATTTAATAGc < 1:35408064‑M2/15‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:18952824/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:1081673/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:18356406/1‑68 (MQ=255) cAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGt < 1:3054260/68‑1 (MQ=255) cAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGt > 1:16262364/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:20580981/1‑68 (MQ=255) acgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:9687351‑M1/51‑1 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:28335062/67‑1 (MQ=255) tGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg > 1:41512928/1‑67 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:32675513/68‑1 (MQ=255) gCTGTGGGAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:22002788/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:42826186/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:1178410/1‑67 (MQ=255) ctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTcc < 1:14732593‑M1/63‑1 (MQ=255) GCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtg < 1:24178024‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:28473929‑M1/68‑1 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCTGGCgtgt > 1:25104122‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:29869114‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtt < 1:35934291‑M1/68‑1 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtt > 1:3369572‑M1/1‑68 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtt < 1:23623179‑M1/68‑1 (MQ=255) TGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaa < 1:17997155‑M1/68‑1 (MQ=255) GCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaaa > 1:40346484‑M1/1‑68 (MQ=255) GCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaaa < 1:42303908‑M1/68‑1 (MQ=255) GCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaaa < 1:10074828‑M1/68‑1 (MQ=255) tCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGAc > 1:13836800/1‑68 (MQ=255) tGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgg < 1:2479186/68‑1 (MQ=255) tGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgg < 1:17510475/68‑1 (MQ=255) tGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgg < 1:43040752/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:41046935/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:23095849/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:6640475/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:5556044/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:34959329/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:14274766/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:34177929/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:32972638/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:32370698/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:26400729/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:27793940/68‑1 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:41987462/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:7006360/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:6046504/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:3658020/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:35703268/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:115640/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:19377343/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:27525742/1‑68 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTa < 1:7284380‑M2/57‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:25566901‑M2/59‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:3974763‑M2/59‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:9055514‑M2/59‑1 (MQ=255) tccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAcc < 1:25356749‑M2/60‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:22377870‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:4546856‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:849026‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:36281349‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:26869851‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:34698111‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:40914855‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:37639645‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:38672230‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:39513506‑M2/61‑1 (MQ=255) cggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac < 1:40599036‑M2/62‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 1:12789372‑M2/63‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcaca < 1:15156455‑M2/63‑1 (MQ=255) ggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGGGTAACcaca < 1:2002054‑M2/63‑1 (MQ=255) gcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACat > 1:29411789‑M2/5‑68 (MQ=255) catGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACata > 1:4898821‑M2/4‑68 (MQ=255) catGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACat < 1:9381864‑M2/64‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:38213874‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:36802334‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:763290‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:7907652‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:25903254‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:19681957‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:24500835‑M2/66‑1 (MQ=255) | GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATATA > CP009273/1111044‑1111177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |