| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 717 (1.360) | 33 (0.080) | 11/92 | NT | 6.3% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 393 (0.910) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 944 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:6807653‑M1/2‑1 (MQ=255)accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:34814107‑M1/2‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:28837306‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:30767848‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:32560479‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:39354183‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:35953606‑M1/3‑1 (MQ=255) ttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgc < 1:23969511‑M1/5‑1 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:30122697‑M1/7‑1 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:2423361‑M1/7‑1 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:1424317‑M1/61‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAGTGGCTTCTTTACCGGGCTTACGGCGCa > 1:40245904/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:3860438/1‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCa > 1:31738222/1‑68 (MQ=255) tgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAt < 1:12691974‑M1/9‑1 (MQ=255) cacaATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCAt < 1:31266949/68‑1 (MQ=255) gttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGAAtt < 1:8717744‑M1/10‑1 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:41725393/1‑68 (MQ=255) tCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGa < 1:9609679/68‑1 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:23250643/1‑67 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAg < 1:10885788/68‑1 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:39859925/68‑1 (MQ=255) tCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:16096094/1‑66 (MQ=255) cAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgct < 1:25611285/68‑1 (MQ=255) aaCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctg < 1:13759108/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGGGGTtgctgc > 1:4582778/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTttct > 1:4330962/1‑66 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:33019650/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:2252886/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:22765269/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:6425214/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:7070523/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:25138140/1‑68 (MQ=255) cATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCg < 1:16979654/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:28420294/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:13321228/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:18632954/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:30532010/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:26931178/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:42763233/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:21174836/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:11387226/1‑68 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:11919260/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:43442842/68‑1 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:14049247/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:19910466/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:24492042/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:36594577/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:4951278/68‑1 (MQ=255) acacctcccgcattatgagcagtatgtttgACGGCGCAGTTCGAAAAGCGAGGTTGCTGCGTATTCaa < 1:26121571‑M1/38‑1 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:34044381/1‑68 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:39689868/1‑68 (MQ=255) cATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt < 1:1502339/67‑1 (MQ=255) cATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt < 1:42438634/67‑1 (MQ=255) cATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt < 1:42206009/67‑1 (MQ=255) aTCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaa > 1:24747933/1‑68 (MQ=255) aGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATgc > 1:34442699/1‑68 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATgcg > 1:22330286/1‑67 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc > 1:12428145/1‑68 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc < 1:5852708/68‑1 (MQ=255) aTGGCTTCCTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc < 1:18958609/68‑1 (MQ=255) tGGCTTCGTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATgcgc > 1:4098252/1‑66 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:39113817/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:36884058/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:15681662/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:35343592/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:20660746/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:3218583/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:20910784/68‑1 (MQ=255) ggCTTCTTTACCGGGCTTAAGTCGCATTTCGAAAAGCGAGGTGGCTGCGTATTCAATTAATGCGCCGt < 1:41457887/68‑1 (MQ=255) gccttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGt < 1:17360595/66‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:7351753/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:16432313/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:10399035/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26626539/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:23361225/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:21561129/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:29764406/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:33570997/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:19617508/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:35676199/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCAATTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:38213053/67‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:1676221/68‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:9119080/68‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:8312164/68‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:10001711‑M1/56‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:27288683‑M1/56‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:1105982/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:40737889/68‑1 (MQ=255) cggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:37196671/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:14682207/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:29457926/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:20373720/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:5246471/1‑68 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:37890696‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:9347430‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:17900292‑M1/66‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:27765602/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:37604762‑M1/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:36316679‑M1/68‑1 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |