| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 717 (1.360) | 33 (0.080) | 11/92 | NT | 6.3% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 393 (0.910) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 806 total aligned reads displayed.
GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 | gCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc > 1:27282358/1‑68 (MQ=255) cttcttTACCGGGCTTACGGCGCATTTCG‑AAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:41925548/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:23279847/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:19363190/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:8841779/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:29819826/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:39637158/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:35745855/67‑1 (MQ=255) tcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaaa < 1:20140093/68‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:10001711‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:942229/1‑68 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:2409853/1‑67 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:31406373/1‑66 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:11387777/1‑66 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:16436576/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:25832614/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:3482470/68‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:26879515/68‑1 (MQ=255) atgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACt < 1:4962817‑M2/10‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:41445087/1‑66 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:25358221/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:6721687/68‑1 (MQ=255) gcgCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:26351806/66‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:39937941/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:29457926/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:5246471/1‑68 (MQ=255) cTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:14021286/67‑1 (MQ=255) ttACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCa < 1:5840112/67‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:19958859‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:34116938‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:42706681‑M1/66‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:27765602/68‑1 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:42519824‑M1/68‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:27449738‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:36353994‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:15476624‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:1606090‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:21666934‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:12490063‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:9188354‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:22199933‑M1/1‑68 (MQ=255) CGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGc > 1:17097056‑M1/1‑67 (MQ=255) CGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCg < 1:19793360‑M1/68‑1 (MQ=255) GCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCgg < 1:18330280‑M1/68‑1 (MQ=255) ATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGa > 1:33639132‑M1/1‑68 (MQ=255) TTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAgg > 1:36999367‑M1/1‑68 (MQ=255) tagAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:16661852/66‑1 (MQ=255) tCGAAAAGCGAGTTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:20464140/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:12746960/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:8088235/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:38939172/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:8479867/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:39326911/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:28351272/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:10783112/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:36015784/68‑1 (MQ=255) ttgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgtgt < 1:36697914‑M2/30‑1 (MQ=255) ttgaatacgcagcaacctcgcttatcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgtgt < 1:40918644‑M2/30‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:33144291/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:40438122/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:34594870/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:24876811/68‑1 (MQ=255) aaGCGAGGTTGCTGCGTTTTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:17452851/68‑1 (MQ=255) aaGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:30481428/68‑1 (MQ=255) gAGGTTGCTTCGTATTCAAATAAAGCGCCGTCAAACATACTGCTCAAAAAGCGGGAGGTGTTGTGAt < 1:29052831/67‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:11046454/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:32549655/66‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:23764420/66‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAg < 1:35079363/67‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAg < 1:14632713/67‑1 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:5474825/1‑68 (MQ=255) gTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc < 1:7345009/68‑1 (MQ=255) aTTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc > 1:37639485/1‑66 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:31694745/68‑1 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:28729084/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:17795918/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:37935251/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:15168607/1‑67 (MQ=255) aaTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:11866380/44‑1 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:1365090/1‑68 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:38261918/1‑68 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:21148073/1‑68 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa > 1:20921086/1‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:1424317‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:18102867‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:19007227‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:6261732‑M2/9‑68 (MQ=255) tcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:37258788‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:30122697‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:24682160‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg > 1:24348050‑M2/8‑68 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGAACGAGACGCTGGCGAACAGGa > 1:34282395‑M2/7‑68 (MQ=255) gccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGaa < 1:18841701‑M2/63‑1 (MQ=255) cgtCAAACATATTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:20632583‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:6882972‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:30767848‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:4418316‑M2/64‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:7700102/68‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:32025603/68‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:10457351/68‑1 (MQ=255) | GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |