| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 558 (1.060) | 33 (0.080) | 7/90 | NT | 6.9% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 447 (1.060) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 999 total aligned reads displayed.
TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 | tttGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACG > 1:39940870‑M1/1‑68 (MQ=255) ttGTCACGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGa < 1:28870074/68‑1 (MQ=255) tGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaa > 1:20608759/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCTACGaaaa > 1:15748853/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:13342472/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:35396608/1‑68 (MQ=255) cccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:35180347/1‑67 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:41046795/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:14885397/68‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:29958077/67‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:13813107/67‑1 (MQ=255) gAAGGCCGAAGAGAACTAATTAAATCCGAACCTTTTCGGCCCAGTGATAGGCCCCACGAAAAGctctt > 1:37229353/1‑67 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAATGAAAAGCTCTAt < 1:17705012/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAtt > 1:14221466/1‑68 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:28505081/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:38650508/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:33753196/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCAGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:5926914/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:26127901/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:24652328/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGtt < 1:1594664/68‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:1251753/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:23957189/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:41946158/67‑1 (MQ=255) agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAc > 1:5097300‑M2/1‑66 (MQ=255) gagaACTAATTAAATCCGCACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:39329949‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcttttcgt > 1:3506495‑M1/1‑48 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:9650429‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTATAcgt < 1:42236203‑M2/68‑4 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:15489826‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:274104‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:16306514‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg < 1:25143232‑M2/67‑7 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:795708‑M2/1‑60 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:18703570‑M2/1‑59 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:22573253/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:40531811/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGCGCCTaa > 1:29226367/1‑68 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:3778545/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:12986059/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:34566151/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcgtttcgttgggccgatcaatg > 1:26465134‑M1/1‑34 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:43136412/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:12826710/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:31678374/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:21707909/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATAGTTTACGTTGGGCCTAAACGCa > 1:22109130/1‑68 (MQ=255) cGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAgg < 1:5559058/68‑1 (MQ=255) cGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAgg < 1:11156282/68‑1 (MQ=255) aaCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcc > 1:8510907‑M2/1‑47 (MQ=255) ccctTTTAGGCCCATTGACAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcc > 1:4530766‑M2/2‑46 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag < 1:18327881/68‑1 (MQ=255) ttttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACt < 1:31356479/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:25696056/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:36757138/68‑1 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTccc < 1:12117513/68‑1 (MQ=255) tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc > 1:11624519/1‑67 (MQ=255) ggCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggt > 1:34112611‑M1/1‑21 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:10764619/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:35733311/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:8918234/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:41768825/1‑68 (MQ=255) ggCCCATTGAGAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:21318529/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttc > 1:7394295‑M1/1‑20 (MQ=255) gCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttc > 1:39160376‑M1/1‑20 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTGTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:28108602/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:17155789/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:33442239/1‑68 (MQ=255) cccATTGATAGGCCCAACGtaaacaatagagcgttgcgttgggcctatcaatgggcctaaaaggttcg > 1:9453687‑M1/1‑19 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:19893367/1‑68 (MQ=255) cATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcctaaaaggttcgga > 1:36451230‑M2/1‑34 (MQ=255) cATTGATAGGCCCAACGAAAAGCTCTATTCTTTAcgttgggcctatcaatgggcctaaaaggttcgga > 1:4139780‑M2/1‑34 (MQ=255) aTAGGCCCAGCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:19271052/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:6880849/1‑68 (MQ=255) tAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaa > 1:2700884/1‑68 (MQ=255) aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaa < 1:18922925/68‑1 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatgaatgggcctaaaaggttcggatttaattat > 1:23087182‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:10050370‑M1/1‑8 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcctaaaaggttcggatttaattag < 1:18035672‑M2/68‑44 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:4798359/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:23316553/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:10481399/1‑67 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:34315460‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:2369411‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:764927‑M1/1‑7 (MQ=255) cccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGCCTCCCCATGGCAAGAAAAAcc > 1:42711109/1‑68 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:30697770‑M1/1‑6 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:26824258‑M1/1‑6 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGCCTCCCCATGGCAAGAAAAACCa > 1:36132211/1‑68 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:16666457/1‑68 (MQ=255) ccAACGAAAACCCCTATTGTTTAcgtagcgcctatcaatgggcctaaaaggttcggatttaattagt > 1:24222931‑M2/1‑23 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:31997714‑M1/68‑66 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:3311870/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:21041953/68‑1 (MQ=255) cGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct < 1:38350463‑M1/68‑67 (MQ=255) cGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct < 1:43569971‑M1/68‑67 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:32816271‑M1/1‑1 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:6640062/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:6310891/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:20282429/1‑68 (MQ=255) | TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |