New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3851553 =547 (1.040)42 (0.100) 13/86 NT 11.0% coding (212/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?CP009273 3851602 = 262 (0.650)coding (163/1494 nt) yidJ sulfatase/phosphatase superfamily protein

Only 100 of 753 total aligned reads displayed.

CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATC  >  CP009273/3851537‑3851668
                                                                 |                                                                  
 gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                 <  1:4029940/68‑1 (MQ=255)
 gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                 <  1:29718788/68‑1 (MQ=255)
 gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                 <  1:30404879/68‑1 (MQ=255)
 gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                 <  1:30765105/68‑1 (MQ=255)
 gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                 <  1:8649066/68‑1 (MQ=255)
 cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                 <  1:41552383‑M2/4‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                               <  1:17542136/68‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                               <  1:10523280/68‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                               <  1:15144485/68‑1 (MQ=255)
     ttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGt                                                              <  1:12649477‑M2/7‑1 (MQ=255)
     cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCTCGTGCAGGCGt                                                              <  1:36002979/67‑1 (MQ=255)
     cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt                                                              >  1:37404107/1‑67 (MQ=255)
      gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTAc                                                            <  1:37986901/68‑1 (MQ=255)
         acgcctgCACGGGCCGGCCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa                                                          <  1:1327991‑M1/60‑1 (MQ=255)
         acgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa                                                          <  1:13397422‑M1/60‑1 (MQ=255)
          cgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa                                                         <  1:31105494‑M1/61‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       <  1:1473744/68‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       >  1:28394726/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       >  1:10014850/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       >  1:38817952/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       >  1:20998712/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGACCGGCCCGTGCAGGCGTACAAAcc                                                       >  1:24708416/1‑68 (MQ=255)
           tgGGCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                       <  1:23091419/68‑1 (MQ=255)
           gccggcccgggccggactatttcccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAAcc                                                       <  1:33412303‑M2/14‑1 (MQ=255)
            cctgCACGGGCCGGCCTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                      <  1:23868617‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAACCCg                                                      <  1:12512304‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                      <  1:1694357‑M1/64‑1 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                    >  1:18615394/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                    >  1:29292664/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                    >  1:11921256/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGACCGGCCCGTGCAGGCGTACAAACCGGt                                                    >  1:31637943/1‑68 (MQ=255)
               ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                    <  1:39097997/67‑1 (MQ=255)
                CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                  <  1:2559658‑M1/68‑1 (MQ=255)
                 acgggcagcactatttaccggtatctacgataaccactccggcccttgCAGGCTTACAAACCGGTGaa                                                 <  1:36667153‑M2/20‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCCGGCGTACAAACCGGTGa                                                  <  1:20750689‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACCACCCGGTGa                                                  <  1:6972163‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                  <  1:14107445‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                  <  1:19064721‑M1/67‑1 (MQ=255)
                   GGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACa                                               <  1:40523721‑M1/68‑1 (MQ=255)
                    GGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg                                              <  1:3123833‑M1/68‑1 (MQ=255)
                     GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg                                              >  1:41268266‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                             >  1:1677184‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                             >  1:32544066‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                             >  1:6010245‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt                                            <  1:9486986‑M1/68‑1 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt                                            <  1:33910390‑M1/68‑1 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGGAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                             >  1:24123395‑M1/1‑67 (MQ=255)
                       cggactatttcccggaatctacgcaacccaggccggcccgtgCAGGCGTACAAACCGGTGAACAGgt                                            <  1:26078158‑M2/25‑1 (MQ=255)
                       cgcactatttaccggtatctaccctaacccgcccggcccgtgCAGGCGTACAAACCGGTGAACAGgt                                            <  1:15816225‑M2/25‑1 (MQ=255)
                       CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt                                            >  1:19291771‑M1/1‑67 (MQ=255)
                         GACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGCACAGGTGTa                                         <  1:30171527‑M1/68‑1 (MQ=255)
                          ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                        <  1:21333496‑M1/68‑1 (MQ=255)
                          ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAAGTGTAg                                        <  1:8017302‑M1/68‑1 (MQ=255)
                           CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                        <  1:19832602‑M1/67‑1 (MQ=255)
                            TGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc                                      <  1:20073689‑M1/68‑1 (MQ=255)
                               ttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                   <  1:13699325‑M2/34‑1 (MQ=255)
                               ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                   >  1:43288610/1‑68 (MQ=255)
                               tccccggtatctacccaaccccggccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                   <  1:8247318‑M2/34‑1 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGaa                                  <  1:28789266/68‑1 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                   <  1:22052708/67‑1 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                   <  1:18196160/67‑1 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                              >  1:41996821/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                              >  1:37099960/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                              <  1:35082708/68‑1 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                              >  1:27133225/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                              >  1:15259116/1‑68 (MQ=255)
                                     tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa                             >  1:482919/1‑68 (MQ=255)
                                      aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg                            <  1:23554518/68‑1 (MQ=255)
                                      aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg                            <  1:7240287/68‑1 (MQ=255)
                                        aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg                          >  1:16236457/1‑68 (MQ=255)
                                        aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg                          >  1:24982961/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa                             >  1:2530133/1‑64 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                         >  1:5709298/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                         >  1:26441072/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                         >  1:6675399/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                         >  1:38208423/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                         >  1:24428692/1‑68 (MQ=255)
                                          aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa                        <  1:27484640/68‑1 (MQ=255)
                                          aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa                        >  1:39670751/1‑68 (MQ=255)
                                            cGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt                       >  1:10245470/1‑67 (MQ=255)
                                              gTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa                      >  1:10902782/1‑66 (MQ=255)
                                              gTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATa                      >  1:11434126/1‑66 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                >  1:22626643/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                >  1:13082046/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                >  1:42593670/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                >  1:7738460/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                >  1:6434098/1‑68 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgc              >  1:42358779‑M2/14‑68 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg               >  1:32129030‑M2/14‑67 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg               >  1:27923122‑M2/14‑67 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg               >  1:32906897‑M2/14‑67 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg               >  1:26674492‑M2/14‑67 (MQ=255)
                                                     gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc             >  1:16519534‑M2/13‑68 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCcgccgc           >  1:35578200‑M2/11‑68 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg        >  1:3361219‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg        >  1:33186599‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg        <  1:40879783‑M2/61‑1 (MQ=255)
                                                            ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGAc      <  1:17901423‑M2/63‑1 (MQ=255)
                                                                gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTAt   <  1:41803903‑M2/66‑1 (MQ=255)
                                                                gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc  >  1:3427962‑M2/2‑68 (MQ=255)
                                                                 |                                                                  
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATC  >  CP009273/3851537‑3851668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.