| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3870904 = | NA (NA) | 4 (0.010) | 4/84 | NT | NA | intergenic (‑79/+161) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B |
| ? | CP009273 | 3870933 = | NA (NA) | intergenic (‑108/+132) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B | |||||
Only 100 of 633 total aligned reads displayed.
ATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC > CP009273/3870866‑3871000 | ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:23881317/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:18639363/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:42288813/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:15011237/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:14227236/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:38825614/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:26469418/68‑1 (MQ=255)ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:35671112/68‑1 (MQ=255) taaggcgttcacgccgcatccggcaagaagctataagaaaagggcggagatcatctccgcccttttc < 1:29540240‑M2/1‑1 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCtt < 1:41360437/68‑1 (MQ=255) gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTta > 1:36614547/1‑68 (MQ=255) gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTta > 1:27117247/1‑68 (MQ=255) gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTta > 1:6046503/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:24131199/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:34036405/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:27756860/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:2012545/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:1925183/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:9159851/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:12101790/1‑68 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGctt < 1:5491095/67‑1 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGct > 1:40840241/1‑66 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGct > 1:3728594/1‑66 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGct > 1:38340555/1‑66 (MQ=255) taTTGCGGATTGCAGAATTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGa < 1:31161730/67‑1 (MQ=255) tGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgc > 1:15973835/1‑68 (MQ=255) cGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcg > 1:31927988/1‑67 (MQ=255) ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcggc > 1:15469746/1‑68 (MQ=255) gATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcggc < 1:16267886/67‑1 (MQ=255) aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcggcg < 1:11821206/67‑1 (MQ=255) aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGt > 1:27957324/1‑68 (MQ=255) gCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGaa < 1:21688093/68‑1 (MQ=255) aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAAc > 1:12528220/1‑67 (MQ=255) gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg > 1:742498/1‑67 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:6345342/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:8316387/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:22311625/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:34318098/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:1737436/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:7682547/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:39846489/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:4810580/66‑1 (MQ=255) aaTAAAAACGGCGGAGATGAGCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:43161880/65‑1 (MQ=255) aagAAAAGGGCGGTGATGATCTCCGGCCTTTTCTTATAGCTTCTTGCCGGATGAGGCGTGAACGCCtt < 1:33782036‑M1/65‑1 (MQ=255) tAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTa > 1:39369274/1‑68 (MQ=255) AAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATcc < 1:23190586‑M1/68‑1 (MQ=255) AAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATcc < 1:28383543‑M1/68‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCgg > 1:20921426‑M1/1‑68 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCgg > 1:15696860‑M1/1‑68 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCg < 1:2129892‑M1/67‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCg < 1:28959736‑M1/67‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCg < 1:5111234‑M1/67‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCg < 1:12778321‑M1/67‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCg < 1:10740904‑M1/67‑1 (MQ=255) AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGAAGCGGCGTGAACGCCTTATCCgg > 1:42881125‑M1/1‑68 (MQ=255) GGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCgg < 1:32305791‑M1/66‑1 (MQ=255) GCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGc > 1:10458722‑M1/1‑66 (MQ=255) GCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGc > 1:16883665‑M1/1‑66 (MQ=255) CGGAGTTGATCTCCGCCCTTTTCTTATAGCTTCTTGGCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:37407886‑M1/1‑67 (MQ=255) CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:31488560‑M1/1‑67 (MQ=255) CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:808135‑M1/1‑67 (MQ=255) CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:34552818‑M1/1‑67 (MQ=255) CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:14740130‑M1/1‑67 (MQ=255) GGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc > 1:36216561‑M1/1‑68 (MQ=255) TGATCTCAGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAt < 1:17968155‑M1/68‑1 (MQ=255) tctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAt > 1:33116066‑M2/14‑68 (MQ=255) tctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAt > 1:19708570‑M2/14‑68 (MQ=255) tctccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAt > 1:19055985‑M2/14‑68 (MQ=255) tccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGa > 1:10975474‑M2/12‑68 (MQ=255) tccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGa > 1:3782942‑M2/12‑68 (MQ=255) tccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGa > 1:8570350‑M2/12‑68 (MQ=255) tccgcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGa > 1:42084337‑M2/12‑68 (MQ=255) gcccttttCTTATAGCTTCTTGCCGGCTGCGGCGTGAACCCCGTATCCGGCCGACAAAATCATgaaat > 1:7292459‑M2/9‑67 (MQ=255) gcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaaa > 1:9510261‑M2/9‑68 (MQ=255) gcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaaa > 1:402736‑M2/9‑68 (MQ=255) gcccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGaaaa > 1:26776961‑M2/9‑68 (MQ=255) cccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:8915553‑M2/8‑68 (MQ=255) cccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:22754841‑M2/8‑68 (MQ=255) cgttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:24939234‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:39623546‑M2/7‑67 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:10020920‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:33439610‑M2/7‑67 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:30006909‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:11576907‑M2/7‑67 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt > 1:35196841‑M2/7‑67 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:6895704‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:13942613‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:29217527‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:18234174‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:43551547‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:25553453‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:22089761‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:23569773‑M2/61‑1 (MQ=255) ccttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAt < 1:40507694‑M2/61‑1 (MQ=255) cttttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTc < 1:26051344‑M2/63‑1 (MQ=255) tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCaa > 1:32812586‑M2/4‑68 (MQ=255) ttCTTATAGGTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAAt < 1:25228597‑M2/66‑1 (MQ=255) tCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAAt > 1:13286585‑M2/2‑67 (MQ=255) cTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAc > 1:25779454/1‑68 (MQ=255) cTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAc > 1:3050985/1‑68 (MQ=255) | ATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC > CP009273/3870866‑3871000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |