New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =530 (1.010)51 (0.120) 13/88 NT 12.1% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 326 (0.790)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 918 total aligned reads displayed.

AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884
                                                                   |                                                                   
  gcaacggagaacgacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa                                                                   <  1:29603285‑M2/3‑1 (MQ=255)
  gcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa                                                                   <  1:41046255‑M2/3‑1 (MQ=255)
  aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   >  1:1829337/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:28881596/67‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:40620451/67‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:38009290/67‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:32101524/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:15907115/1‑68 (MQ=255)
         ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                                                             >  1:33376750/1‑67 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:29897049/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:61244/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:18921595/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:24122248/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:16848860/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:163771/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:5383489/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:43655676/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:12515082/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:11064496/1‑68 (MQ=255)
           cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           <  1:22287112/67‑1 (MQ=255)
             acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                                                        <  1:26383644/68‑1 (MQ=255)
             acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                                                        <  1:9244478/68‑1 (MQ=255)
             acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                                                        <  1:7361441/68‑1 (MQ=255)
               acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:20852902/1‑68 (MQ=255)
               acGACTTCAGCGCGGGCGAAGGGCTGTACACGCAAATGCAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:19299295/1‑68 (MQ=255)
                          gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            <  1:2807334/67‑1 (MQ=255)
                          gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCa                                           <  1:19740383/68‑1 (MQ=255)
                               cgcagggctttcttgtgggtctacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:38375528‑M2/32‑1 (MQ=255)
                               cgaagggctttcatgggcggccacaccccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:374102‑M2/32‑1 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:20257027‑M1/1‑67 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:42057842‑M1/1‑67 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:24701572‑M1/1‑67 (MQ=255)
                                gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:15419185‑M2/32‑1 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:36591131‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:26902117‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:36010045‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:36316387‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:32894285‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:3507679‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:35716427‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:25177878‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:13113114‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:13327280‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:25398953‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:26645776‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:23663216‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:33817311‑M1/1‑68 (MQ=255)
                                  tgggCTGTACTCGCACATGAAAGCTCTTCGCGCCGATTAAGACCGTCTTTCTCCTTTGCACTCGGTc                                    <  1:4294967/66‑1 (MQ=255)
                                   GGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa                                  <  1:14132006‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:12087812‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:28655476‑M1/68‑1 (MQ=255)
                                     gctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:3952874‑M2/37‑1 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:4143855‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:31736132‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:38809492‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:27518645‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:34529864‑M1/1‑67 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            <  1:41692991/67‑1 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            <  1:14617310/67‑1 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:8994905/1‑67 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:37092823/1‑67 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:22659077/1‑61 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:18512061/1‑68 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         >  1:17777174/1‑68 (MQ=255)
                                             gtccgtgcacacccctccgcccCGAGGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAg                        <  1:30199347‑M2/46‑1 (MQ=255)
                                             cGCACATGATCGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          <  1:40154708/66‑1 (MQ=255)
                                             cGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAg                        >  1:9740529/1‑68 (MQ=255)
                                             cGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAg                        >  1:21785742/1‑68 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:4978571/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:7870902/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:10561517/68‑1 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:10029251/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:2717612/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:26111663/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:655215/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:17341899/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:11756649/1‑68 (MQ=255)
                                                acaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTgg                     <  1:27863417/68‑1 (MQ=255)
                                                 caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    <  1:8160533/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTAGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:29185045/68‑1 (MQ=255)
                                                  aTGAAACCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:34185266/68‑1 (MQ=255)
                                                  aTGAAACCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:31147806/68‑1 (MQ=255)
                                                   tGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    >  1:4236656/1‑66 (MQ=255)
                                                   gtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:25643404‑M2/51‑1 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTTACCAGTGGGACTgg               >  1:19602095/1‑68 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               >  1:13652345/1‑68 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               <  1:21419532/68‑1 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:41813808‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:8560319‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:15026920‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:23046575‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:3068983‑M2/12‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:581101‑M2/10‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:6940053‑M2/10‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:43205375‑M2/10‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:10296356‑M2/10‑68 (MQ=255)
                                                           cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:39015836‑M2/60‑1 (MQ=255)
                                                           cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:11246870‑M2/60‑1 (MQ=255)
                                                            ttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgc         <  1:16644022‑M2/61‑1 (MQ=255)
                                                                 ccCGATGAAGACCGTCTTTCTCCGTTGCACGCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAAt    <  1:34751924‑M2/66‑1 (MQ=255)
                                                                   |                                                                   
AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.