New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 64557391 (0.740)25 (0.060) 9/94 NT 6.2% coding (1224/2352 nt) polB DNA polymerase II
?CP009273 = 64577 434 (0.980)coding (1204/2352 nt) polB DNA polymerase II

Only 100 of 639 total aligned reads displayed.

ACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64511‑64644
                                                                  |                                                                   
acacGCGTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:35451593‑M2/1‑67 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTTAATCCATCACGTAgcc                                                                     <  1:8663835/67‑1 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     >  1:41232435/1‑67 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     >  1:40475658/1‑67 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:2318357‑M2/1‑67 (MQ=255)
    gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:33893047‑M2/68‑6 (MQ=255)
    gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:469942‑M2/68‑6 (MQ=255)
    gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:7653292‑M2/68‑6 (MQ=255)
    gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:14642704‑M2/68‑6 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGCATCCATCACGTAGCCgccagg                                                               <  1:31191715‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGACTCCATCACGTAGCCgccagg                                                               <  1:40842932‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:6280226‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:32428831‑M2/68‑7 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg                                                              >  1:30757464‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:3700396‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:42650684‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:35955247‑M2/1‑61 (MQ=255)
      tttaATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGGCGTGAATCCATCACGTAGCCgccagg                                                               >  1:13503005‑M2/1‑61 (MQ=255)
       tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc                                                             >  1:27263470‑M2/1‑60 (MQ=255)
       tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:43626240‑M2/66‑7 (MQ=255)
          ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:4951776/1‑67 (MQ=255)
          ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:5411675/1‑67 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttat                                                        >  1:34972749‑M2/1‑55 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:16338717/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:12810412/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:19891320/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:28812440/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:10844098/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:22763949/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:25196063/1‑68 (MQ=255)
              tCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGt                                                       >  1:2066368/1‑67 (MQ=255)
               ccatcaccagcaCTGAATCAAAACGCCCTGTCCGTGAATCCATCACGTAGCCgcccgggctttatgat                                                     >  1:27944856‑M2/1‑52 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgat                                                     >  1:8040842‑M2/1‑52 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatg                                                       >  1:17941696‑M2/1‑52 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:42937739/1‑68 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:14321693/1‑68 (MQ=255)
                cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:35786949/68‑1 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagt                                                >  1:37459080‑M2/1‑47 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:23502903/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:24318545/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:29795531/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:18209493/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:1070029/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGAGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:34174002/1‑67 (MQ=255)
                     ccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtg                                               >  1:40003466‑M2/1‑46 (MQ=255)
                         cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:24850747/1‑67 (MQ=255)
                         cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:3916258/1‑67 (MQ=255)
                         cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:39565480/1‑67 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCAc                                             <  1:41613503/65‑1 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:26475884/1‑68 (MQ=255)
                            tGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCg                                         >  1:21473246/1‑67 (MQ=255)
                            tGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGc                                        <  1:956727/68‑1 (MQ=255)
                               aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:13779817/1‑68 (MQ=255)
                                 cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:26893848/68‑1 (MQ=255)
                                 cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:11187573/68‑1 (MQ=255)
                                 cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   >  1:33220389/1‑68 (MQ=255)
                                  aTAAAGCCCTGCCCGTGAATCCATCACGAAGCCgccagggctttatgattcagtgctggggctggact                                  >  1:15052774‑M2/1‑33 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:10018820/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:36585015/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:14110303/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:33599570/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:12589186/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:6601420/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:25575243/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:9756027/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:10348203/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:11496812/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:32217666/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:27570631/1‑68 (MQ=255)
                                        cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:350977/1‑67 (MQ=255)
                                        cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:28502789/1‑67 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:3636755/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:18475067/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:3029667/1‑68 (MQ=255)
                                         ccTGCCCGTGACGCCATCACGTCGCCgccagggctttatgattcagggctggtgctggactataaaag                           >  1:16674389‑M2/1‑26 (MQ=255)
                                          ccggccGTCAACCCATCACGTAGCCgcccgggctttatcattcagtgctggtgctggactataaaagc                          >  1:19768631‑M2/3‑25 (MQ=255)
                                          cTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGcgcg                          <  1:17442467/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:3187489/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:34516948/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:9259712/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:15432681/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:16912484/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:1932035/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:42348626/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:23920873/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:41806473/68‑1 (MQ=255)
                                              ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:11762600/1‑68 (MQ=255)
                                               cGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATa                     >  1:7055833/1‑68 (MQ=255)
                                                gTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATaa                    <  1:20354612/68‑1 (MQ=255)
                                                gTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATaa                    <  1:12145515/68‑1 (MQ=255)
                                                    aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:38248920/1‑67 (MQ=255)
                                                    aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:13264024/1‑67 (MQ=255)
                                                      ccATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAgc               >  1:19019094/1‑67 (MQ=255)
                                                        aTCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGcgcg            >  1:43401098/1‑68 (MQ=255)
                                                          cACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          <  1:8972761/68‑1 (MQ=255)
                                                           aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:5096416/1‑67 (MQ=255)
                                                            cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGc        >  1:5698874/1‑68 (MQ=255)
                                                            cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGc        >  1:32785143/1‑68 (MQ=255)
                                                            cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGc        >  1:26120357/1‑68 (MQ=255)
                                                                  cgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTcgc  >  1:22201774/1‑68 (MQ=255)
                                                                  |                                                                   
ACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64511‑64644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.