| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 442683 | 454 (0.860) | 39 (0.090) | 11/90 | NT | 8.4% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 491 (1.160) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
Only 100 of 960 total aligned reads displayed.
GAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCT > CP009273/442655‑442789 | gAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcg < 1:7153638/68‑1 (MQ=255)gAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcg < 1:1274232/68‑1 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:6381806‑M2/68‑4 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:33197812‑M2/68‑4 (MQ=255) ttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCggcggc > 1:38204546‑M1/13‑67 (MQ=255) gCCAGCAGGATCGCTGCGCCGCTATCGACCTCACCGGTTACCGCACAGTAGCCGATAACCGgcggcgc < 1:39248553‑M2/68‑8 (MQ=255) ccAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca < 1:8443046‑M2/68‑9 (MQ=255) cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca > 1:33483497‑M2/1‑59 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:41581239‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:37702622‑M2/1‑55 (MQ=255) ggCGCTGCGCCGCTATCGAACTCCCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga < 1:27283592‑M1/66‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACCGTAGCCGATCACCGGCGGCGCAGCGcc < 1:25516344/65‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCgg < 1:21127396/67‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga > 1:19343266/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGTCCATCACCGGCGGCGCAGCGCCGgaga > 1:13622800‑M1/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:15342429‑M1/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:26152965‑M1/1‑68 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:2758796‑M1/67‑1 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:12465667‑M1/67‑1 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:40040942‑M1/67‑1 (MQ=255) TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:43235874‑M1/68‑1 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:34044063‑M1/1‑68 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:4278129‑M1/1‑68 (MQ=255) cgccgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:3030826‑M2/1‑45 (MQ=255) GCCGCTATCCAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGACAgcgca > 1:20732826‑M1/1‑65 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:34420847‑M2/1‑42 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:5099756‑M2/1‑42 (MQ=255) cgcAATCGAACTCCCCGGTAACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctat > 1:23311291‑M2/1‑42 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:28511630‑M1/1‑67 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:10399717‑M1/1‑67 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:16040835‑M1/1‑67 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCa > 1:2986596‑M1/1‑68 (MQ=255) cGAACTCACCGGTTACCGCACAGTAGCCGATCCCCGgcggcgcagcgatcctgctggctatcttcagc > 1:11069120‑M2/1‑36 (MQ=255) cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc > 1:43563747/1‑68 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:19855507/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:11392814/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:10034799/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt > 1:29019768/1‑67 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt < 1:42352277/67‑1 (MQ=255) aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCCCAGCGCCGGAGAGCGAACCAAACAACGt > 1:17094375/1‑67 (MQ=255) aCTCACCGGTAACCGCACAGAAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAACAATCACCgg > 1:15728731/1‑66 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatcttcagcctgt > 1:3702770‑M2/1‑32 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatcttcagcctgt > 1:28220409‑M2/1‑32 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:679661/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:3493465/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:5882225/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:36303980/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:38448818/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:8044606/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:14584555/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:1900173/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:21989609/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:22424034/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:16691275/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:18617402/68‑1 (MQ=255) cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc < 1:24282498/68‑1 (MQ=255) cTCACCGGCTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatcttcagcctgt > 1:1186668‑M2/1‑32 (MQ=255) tCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGcc > 1:35736789/1‑68 (MQ=255) ggTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg > 1:17472770/1‑67 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag > 1:4103219/1‑68 (MQ=255) tACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACag > 1:26416653/1‑68 (MQ=255) aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga < 1:40221418/68‑1 (MQ=255) gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg > 1:25827855/1‑68 (MQ=255) cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg > 1:21741508/1‑67 (MQ=255) acaGTAGCCGATCACCGGCGGCGCAGCGCAGGAGAGCGAACCAATCAACGTGCCGTAGCCAGAGTGGc > 1:38807997/1‑68 (MQ=255) gTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt > 1:17946015/1‑68 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:42011610/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:31265517/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:22880647/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:35199433/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:24641324/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt < 1:43047202/67‑1 (MQ=255) aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc < 1:7340028/68‑1 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:5453444/1‑68 (MQ=255) gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa > 1:10598731/1‑68 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt < 1:14814437/67‑1 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt < 1:2025165/67‑1 (MQ=255) cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTCTCATg < 1:32313967/68‑1 (MQ=255) gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt < 1:18211046/68‑1 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:14048975/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:23640953/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:7717246/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt > 1:31859101/1‑67 (MQ=255) aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTGCATGt > 1:25068035/1‑67 (MQ=255) aCCGGCGGCGCAGCGCCGGTGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:26988671/1‑68 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:36573153/1‑68 (MQ=255) aCCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAg > 1:30805405/1‑68 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:9202168/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:9607914/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:8981316/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:4598053/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:39774018/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:37287787/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:32691557/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:29410041/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:15066921/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:14253063/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:13093637/68‑1 (MQ=255) ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg < 1:1211438/68‑1 (MQ=255) cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc < 1:8681724/68‑1 (MQ=255) | GAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCT > CP009273/442655‑442789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |