| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1586885 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (‑186/+37) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
| ? | CP009273 | 1586916 = | NA (NA) | intergenic (‑217/+6) | hipB/yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog | |||||
Only 100 of 662 total aligned reads displayed.
ATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTT > CP009273/1586849‑1586983 | aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:24423346/1‑68 (MQ=255)aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:12205433/1‑68 (MQ=255)aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:13758820/1‑68 (MQ=255)aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:38754929/1‑68 (MQ=255)aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:30047577/1‑68 (MQ=255) tAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtat > 1:31029633/1‑67 (MQ=255) aaGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATAc > 1:14440089/1‑68 (MQ=255) aGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACg < 1:26779526/68‑1 (MQ=255) aGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACg < 1:36022934/68‑1 (MQ=255) aGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACg < 1:42922813/68‑1 (MQ=255) cGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGt < 1:17544933/67‑1 (MQ=255) tGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTAc < 1:2009650/68‑1 (MQ=255) gATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTAcc > 1:15100054/1‑68 (MQ=255) aTGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGAGGCTTATACGGTTTACCa > 1:6998255/1‑68 (MQ=255) tGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCa > 1:28760339/1‑67 (MQ=255) tGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCa > 1:28086338/1‑67 (MQ=255) tcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGc < 1:15788704/67‑1 (MQ=255) gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGc < 1:20769664/68‑1 (MQ=255) gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGc < 1:6588837/68‑1 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCta > 1:33615264/1‑68 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCta > 1:8389931/1‑68 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCta > 1:10114405/1‑68 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCt < 1:36207488/67‑1 (MQ=255) gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCt < 1:43595484/67‑1 (MQ=255) cGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCtata > 1:12365005/1‑68 (MQ=255) cGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCtat < 1:11014605/67‑1 (MQ=255) gTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTatat < 1:19629452/68‑1 (MQ=255) gctggtaaaccgtaTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTc < 1:35265759‑M1/53‑1 (MQ=255) aaGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTc > 1:967613/1‑66 (MQ=255) aGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt < 1:8802263/68‑1 (MQ=255) aGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt < 1:24042327/68‑1 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:21168774/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:36828469/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:12900121/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:30438763/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:4520938/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:25629895/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:23509613/1‑67 (MQ=255) gTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACt > 1:7842117/1‑67 (MQ=255) cGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTc < 1:32176321/66‑1 (MQ=255) ggCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCa < 1:14581078/68‑1 (MQ=255) aaTATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCa < 1:35483547/68‑1 (MQ=255) atTAAGCCGCTTGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:41376464/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:29279014/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:8250563/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:39763434/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:43311705/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:24606620/68‑1 (MQ=255) atTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGc < 1:11395686/68‑1 (MQ=255) tAAGCCGCTTGGCATCTCGACATGCGGGTTTTACGGTTTACGTGCTTTATTTCACTCCCTGCATGccc < 1:11727081/68‑1 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:27614853‑M1/1‑68 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:5991231‑M1/1‑68 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:37477880‑M1/1‑68 (MQ=255) TAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc > 1:33969959‑M1/1‑68 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:19008928‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:3073112‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:16142818‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:7451558‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:13301977‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:10753309‑M1/68‑1 (MQ=255) GCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa < 1:28414695‑M1/68‑1 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa > 1:5052475‑M1/1‑66 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa > 1:5677889‑M1/1‑66 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa > 1:35114695‑M1/1‑66 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa > 1:16744604‑M1/1‑66 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt > 1:20319197‑M1/1‑68 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt < 1:42437671‑M1/68‑1 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt > 1:39172512‑M1/1‑68 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt > 1:31565507‑M1/1‑68 (MQ=255) CGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt > 1:38476552‑M1/1‑68 (MQ=255) GCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTa > 1:1047301‑M1/1‑68 (MQ=255) TGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCg > 1:14052770‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:17785058‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:26309896‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:9117532‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:28936715‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:31418668‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:12565385‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:41861078‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:40934992‑M1/1‑68 (MQ=255) GCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc > 1:15617821‑M1/1‑68 (MQ=255) ccATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCt < 1:22602584/68‑1 (MQ=255) cATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCt < 1:40478522/67‑1 (MQ=255) cATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCt < 1:33175022/67‑1 (MQ=255) cATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCt < 1:25984652/67‑1 (MQ=255) ctcGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAg < 1:27311799/68‑1 (MQ=255) tcGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGc < 1:3439477/68‑1 (MQ=255) tcGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGc < 1:32840721/68‑1 (MQ=255) gACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCt < 1:17395578/68‑1 (MQ=255) aCATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCtt > 1:36564227/1‑68 (MQ=255) catgcggcttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCttt < 1:10014470‑M2/57‑1 (MQ=255) catgcggcttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCtt < 1:40721775‑M2/56‑1 (MQ=255) tgcggcttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTa > 1:22973898‑M2/10‑67 (MQ=255) cttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCAcc < 1:38010047‑M2/63‑1 (MQ=255) ttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTa < 1:32576825‑M2/65‑1 (MQ=255) ttaTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTa < 1:21547004‑M2/65‑1 (MQ=255) aTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGt < 1:18464177‑M2/67‑1 (MQ=255) aTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGt < 1:37708777‑M2/67‑1 (MQ=255) aTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGt < 1:24979526‑M2/67‑1 (MQ=255) aTACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGt < 1:21733841‑M2/67‑1 (MQ=255) | ATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTT > CP009273/1586849‑1586983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |