| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2925176 = | NA (NA) | 9 (0.020) | 4/92 | NT | NA | noncoding (1/30 nt) | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2925206 = | NA (NA) | intergenic (+37/+18) | ygdG/fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase | |||||
Only 100 of 695 total aligned reads displayed.
AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 | attttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCa < 1:199905/65‑1 (MQ=255)aaTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCa < 1:38902624/67‑1 (MQ=255)aaTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCAt < 1:18673954/68‑1 (MQ=255) aTTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCAtt < 1:6567602/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:23548185/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:28444402/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:21048782/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:1954346/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:18887016/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:39861623/68‑1 (MQ=255) tttACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTa < 1:16642498/68‑1 (MQ=255) ccataccgcctggtaaatgcgctgatgtgctaatgccggatacgcccgttgcggcgtatccggcATTa < 1:33656976‑M2/4‑1 (MQ=255) ccataccgcctggtaaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTa < 1:713442‑M2/4‑1 (MQ=255) aCAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATAAGCCGCAAACGTCGTATCCGGCATTATc > 1:37322813/1‑67 (MQ=255) cAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATTACCCGCAAACGTCGTATCCCGCATTATcac > 1:43272010/1‑68 (MQ=255) gCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATcaca > 1:3259014/1‑67 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATcaca < 1:15284118/65‑1 (MQ=255) aaTTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACAt < 1:25942779/66‑1 (MQ=255) tGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcg < 1:37805012/68‑1 (MQ=255) ggtaaatgcgctcaggtgataatgccggatacgacgtgtgcggcgtatccggcATTATCACATCAgcg < 1:27385026‑M2/15‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:22996515/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:6858231/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:12863668/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:31743933/68‑1 (MQ=255) gCGGTTGGTACGGTAACGGCGAGCCGGATAAGCCGCAAACGTCGTATCCGGCATTATCACATCAgcgc < 1:34648279/68‑1 (MQ=255) taaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTATCACATCAgcgc < 1:12448700‑M2/16‑1 (MQ=255) cGGTTGGTACGGTAACGGCGAGCCCGATAAGCCGCAAACGTCGTATCCGGCAATATCACATCAGCGCa > 1:32989224/1‑68 (MQ=255) ggTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCa < 1:30616256/67‑1 (MQ=255) aaatgcgctgatgtgataatgccggatacgacgtttgcggcgtatccggcATTATCACATCAGCGCa < 1:25390931‑M2/17‑1 (MQ=255) ttGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCAtt < 1:16901600/67‑1 (MQ=255) cgctgatgtgataatGCCGGATACGCCGCACACGTCGTATCCGGCATTTTCACGTCAGCGCATTTAc < 1:1837736‑M1/52‑1 (MQ=255) aCGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAg < 1:16044471/68‑1 (MQ=255) ggTAACGGCGAGGCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGc < 1:7504336/68‑1 (MQ=255) gTAACGGCGAGCCGGATACCCCGCAAACGTCGTATCCGGCATTATCACATAAGCGCATTTACCAGGCg > 1:12153562/1‑68 (MQ=255) gTAACGGCGAGCCCGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCg > 1:10128427/1‑68 (MQ=255) gTAACGGCGAGCCCGATAACCCGCAAAACTCGTATACGGCCTTTTCACATAAGCGCAATTTACAGGCg > 1:38708556/1‑68 (MQ=255) aaCTGCGAGCCGGATACGCCGCAAACGTCGTTTCCGGCATTATCACATCAGCGCATTTACCTGGCGGt < 1:27195084/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGGAAAAGTCGTATCCGGCATTATCCCATCAGCGCATTTACCAGGCGGt > 1:35685217/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCTTTATCACATCAGCGCATTTACCAGGCGGt < 1:20629917/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTAt > 1:41412916/1‑43 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACCTCAGCGCATTTACCAGGGGGt > 1:41026876/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:32341482/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:40147764/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:40506820/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:31098021/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:42315509/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:11570755/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:15667949/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:14536163/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:1742317/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:7708518/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:948378/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGt < 1:2796482/68‑1 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATAACATCAGCGCATTTACCAGGCGGt > 1:22378572/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATACGGCATTTTCACATCAGCGCATTTACCAGGCGGt > 1:34440370/1‑68 (MQ=255) aaCGGCGAGCCGGATACGCCGCAAACGTCGTATACGGCATTATCACATCAGCGCATTTAACAGGCGGt > 1:24006736/1‑68 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:27706479/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:35835509/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATg < 1:13369342/68‑1 (MQ=255) ggCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATAAGCGCATTTTCCAGGCGGTATg > 1:24653942/1‑68 (MQ=255) cGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATAACATCAGCGCATTTACCAGGCGGTATGGt > 1:8131592/1‑68 (MQ=255) gAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGt < 1:42942718/67‑1 (MQ=255) gAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGt < 1:26460189/67‑1 (MQ=255) gAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGt < 1:8572120/67‑1 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:11856993‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:13853971‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:3955473‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:4662679‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:42770122‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:17994845‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:34915902‑M1/1‑68 (MQ=255) CGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGc > 1:19166078‑M1/1‑68 (MQ=255) GGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGct > 1:19743477‑M1/1‑68 (MQ=255) ATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct < 1:14898281‑M1/68‑1 (MQ=255) TACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGctct > 1:5446572‑M1/1‑67 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:15533404‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:38250863‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc < 1:37013030‑M1/68‑1 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:33954340‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTAc > 1:9102906‑M1/1‑68 (MQ=255) ACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTAGGGTAAAGCTCTAc < 1:43578834‑M1/68‑1 (MQ=255) CGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACa < 1:10464313‑M1/68‑1 (MQ=255) ccgcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAat > 1:5057736/1‑68 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:11063133/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:36522983/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:2874310/68‑1 (MQ=255) gcAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat < 1:29225713/68‑1 (MQ=255) aaaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAatat > 1:40832628/1‑66 (MQ=255) aaaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc < 1:36132005/68‑1 (MQ=255) aaaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc < 1:35272891/68‑1 (MQ=255) aaaCGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATcc < 1:597205/68‑1 (MQ=255) cgtcgtATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCcaca > 1:22106194/1‑68 (MQ=255) cgtcgtATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCa > 1:2048578/1‑68 (MQ=255) cgtatccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGc < 1:41703870‑M2/58‑1 (MQ=255) tccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGtt > 1:31526277‑M2/7‑67 (MQ=255) tccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGtt > 1:36690630‑M2/7‑67 (MQ=255) tccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGtt > 1:41945784‑M2/7‑67 (MQ=255) ccggcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGc < 1:31949487‑M2/63‑1 (MQ=255) gcATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTc > 1:29752021‑M2/3‑68 (MQ=255) aTTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAc > 1:30334731/1‑68 (MQ=255) | AATTTACAGCAATTGCGGTTGGTACGGTAACGGCGAGCCGGATACGCCGCAAACGTCGTATCCGGCATTATCACATCAGCGCATTTACCAGGCGGTATGGTAAAGCTCTACAATATCCTCAAGCGTTGCTTCAC > CP009273/2925140‑2925273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |