New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4306574 =	303 (0.430)	17 (0.030)	13/98	NT	6.6%	coding (462/1137 nt)	phnM	ribophosphonate triphosphate hydrolase
	?	CP009273	4306632 =	215 (0.350)					coding (404/1137 nt)	phnM	ribophosphonate triphosphate hydrolase

GCACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4306646‑4306574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCT  >  CP009273/4306632‑4306698                                                                                                                                              GCACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGC                                                                          >  1:52794542/1‑68  CACCGTCTGCATCTGCGCTGCGAACTGGCGCATCACACCACGCTGCCGCTGTTTGAATAACTGGTGCA                                                                         >  1:991844/1‑68  CACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGGTGTTTGAAAAACTGGTGCA                                                                         >  1:32091353/1‑68  CACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCA                                                                         >  1:56857122/1‑68   ACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAG                                                                        <  1:10016870/68‑1   ACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAG                                                                        <  1:46268049/68‑1   ACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAG                                                                        <  1:50770582/68‑1   ACCGGCTTCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAG                                                                        <  1:52748441/68‑1   ACCGGCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAG                                                                        <  1:52683973/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:5085273/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:41909647/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:45923326/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:55801199/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:48673462/68‑1    CCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGC                                                                       <  1:16347163/68‑1      GTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGC                                                                     >  1:33744580/1‑68         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:15256735/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:20590036/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:55481869/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:4979953/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:53616115/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:19082660/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:3055264/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:18969703/68‑1         TGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGA                                                                  <  1:3358875/68‑1          GCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGAT                                                                 <  1:51883255/68‑1          GCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGAT                                                                 <  1:51815870/68‑1          GCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTCTGAAAAACTGGTGCAGCGCAGAT                                                                 <  1:8848998/68‑1             TCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCA                                                              >  1:6446673/1‑68              CTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAG                                                             <  1:42493641/68‑1              CTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAG                                                             <  1:55302272/68‑1              CTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAG                                                             <  1:24056480/68‑1              CTGCGCTGCGAACTGCCGCATCACACCACGCTGCCCCGGGTCGAACAACTGGAGCAGCGCAGATGCAG                                                             <  1:41671631/68‑1               TGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGA                                                            <  1:29033982/68‑1                  GCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGG                                                         >  1:50983999/1‑68                   CTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGT                                                        >  1:24033839/1‑68                    TGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGT                                                        <  1:39009964/67‑1                                 ATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTG                                          >  1:55790415/1‑68                                    ACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGAC                                        >  1:28509812/1‑67                                      ACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCC                                     >  1:56720533/1‑68                                         ACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCG                                  >  1:33507689/1‑68                                              GCCGCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTT                                >  1:16560093/1‑65                                                 GCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCG                          >  1:23886508/1‑68                                                 GCTGTTTGAAAAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCG                          >  1:45913727/1‑68                                                           AAACTGGTGCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGAT                >  1:49674450/1‑68                                                                   gatGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        >  1:49433557/4‑68                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        <  1:43189612/68‑1                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        >  1:23170139/1‑68                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        >  1:12857417/1‑68                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        <  1:42309909/68‑1                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        >  1:9714111/1‑68                                                                   GCAGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGA        >  1:9626701/1‑68                                                                     tGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGAT       <  1:3824915/66‑1                                                                     AGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATC      >  1:38881388/1‑68                                                                     AGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATC      >  1:48996863/1‑68                                                                     AGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGAT       <  1:50239766/67‑1                                                                     AGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGAT       <  1:19497092/67‑1                                                                     AGCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGAT       <  1:57232683/67‑1                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:28155022/1‑68                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:40971359/1‑68                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:7306800/1‑68                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:34521121/1‑68                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:46973959/1‑68                                                                      GCGCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:11621310/1‑68                                                                      GCGCAGAGGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:54197750/1‑68                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATa   >  1:29887723/1‑67                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCAT    <  1:52506392/67‑1                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCAT    <  1:36473390/67‑1                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:8445401/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:8691421/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:1075406/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:36079088/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:11432790/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:56487472/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:14541685/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:22930983/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:52462991/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:27991078/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     <  1:50044698/66‑1                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:4949758/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:35642556/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCA     >  1:40218185/1‑66                                                                        GCAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGGTGATCA     >  1:13385494/1‑66                                                                         CAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCT  >  1:36923066/1‑68                                                                                                                                              GCACCGTCTGCATCTGCGCTGCGAACTGCCGCATCACACCACGCTGCCGCTGTTTGAAAAACTGGTGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4306646‑4306574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcAGATGCAGACGGTGCTCGGCGCGGTTGACGCCGCGTTTCTGCGTCTCTTCGATGGCGTTGATCATCT  >  CP009273/4306632‑4306698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.