New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4306574 =303 (0.430)17 (0.030) 13/98 NT 6.6% coding (462/1137 nt) phnM ribophosphonate triphosphate hydrolase
?CP009273 4306632 = 215 (0.350)coding (404/1137 nt) phnM ribophosphonate triphosphate hydrolase

Only 100 of 487 total aligned reads displayed.

CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641
                                                                  |                                                                   
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:21960135/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGCCACCAGCGTCGCCGGCTcgcg                                                                   >  1:50003163/1‑68 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:52817782/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:32015679/68‑1 (MQ=255)
 atgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    <  1:52506392‑M1/2‑1 (MQ=255)
 acgaagaagagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:15063295‑M2/23‑67 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:34521121‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:40218185‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:11432790‑M1/65‑66 (MQ=255)
   gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:39657033/1‑65 (MQ=255)
   gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 <  1:41125018/68‑1 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:31247561/1‑67 (MQ=255)
    atcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt                                                                 <  1:50239766‑M1/5‑1 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc                                                               >  1:12857417‑M1/62‑68 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc                                                               <  1:43189612‑M1/7‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTg                                                                <  1:10798907/67‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:14377862/68‑1 (MQ=255)
      gTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:3846162/1‑67 (MQ=255)
      gTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               >  1:23019190/1‑67 (MQ=255)
          agcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAg                                                          >  1:46123913‑M2/14‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:33949565/1‑68 (MQ=255)
             atcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGttt                                                       >  1:49674450‑M1/54‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACCCCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:49461817‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:50800677‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:55284156‑M2/11‑68 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:7532544‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:39042850‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:44201854‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:4585749‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:27009038‑M2/58‑1 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:56767274‑M2/58‑1 (MQ=255)
               ctggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGtttt                                                      >  1:27449773‑M2/9‑67 (MQ=255)
                tggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCCCCGGCTCGCGCTGCACCAGTTTTTc                                                    >  1:47123669‑M2/8‑68 (MQ=255)
                tggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTc                                                    >  1:26501500‑M2/8‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTGCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:53840998‑M2/4‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCaaa                                                 <  1:18172604‑M2/64‑1 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCaaa                                                 <  1:15666312‑M2/64‑1 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:42323809‑M2/4‑68 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:9301090‑M2/4‑68 (MQ=255)
                      gggCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACa                                               <  1:28153091/66‑1 (MQ=255)
                        gCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:19583076/1‑68 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:5166251/1‑67 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:24985641/1‑67 (MQ=255)
                             aacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGc                                          >  1:16560093‑M1/38‑65 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGc                                       <  1:16196898/67‑1 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:26020754/1‑68 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:1876701/1‑68 (MQ=255)
                               gAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgt                                     <  1:46950560/68‑1 (MQ=255)
                                aGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtg                                    >  1:42697255/1‑68 (MQ=255)
                                aGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtg                                    >  1:8681311/1‑68 (MQ=255)
                                aGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtg                                    >  1:49357549/1‑68 (MQ=255)
                                        aTCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGAt                             >  1:8865744/1‑67 (MQ=255)
                                        aTCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGAt                             >  1:41747892/1‑67 (MQ=255)
                                         tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACCGCGGCAGCGTGGTGTGATGc                           >  1:4752497/1‑68 (MQ=255)
                                         tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc                           >  1:25575090/1‑68 (MQ=255)
                                         tCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc                           >  1:17037924/1‑68 (MQ=255)
                                           aGCGACACCAGCGTCCCCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:32863571/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:36253167/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:54358384/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:2848587/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:48896899/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:35771559/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:17700441/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:45048879/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:43708819/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:36702964/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:29995738/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12257626/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:21415359/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:5200730/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:38884066/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:3793371/1‑67 (MQ=255)
                                             cGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCa                       >  1:23768271/1‑68 (MQ=255)
                                             cGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCa                       >  1:24197976/1‑68 (MQ=255)
                                              gACACCAGCGTCACCGGCGCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGc                        <  1:37544267/66‑1 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:8111727/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:14731782/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:57851773/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:56274205/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGGGGTGTGATGCGGCAGTTc                   >  1:22228587/1‑67 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgc                 >  1:9688005/1‑68 (MQ=255)
                                                   cAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgc                 >  1:5107581/1‑68 (MQ=255)
                                                    aGCGTCACCGGCTCGCGCTGCCCCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgca                >  1:31690983/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:1003586/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:46502194/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:10406141/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:13740177/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:7063408/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:20144285/1‑68 (MQ=255)
                                                       gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:13871638/1‑67 (MQ=255)
                                                         tctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca           <  1:29033982‑M1/59‑1 (MQ=255)
                                                           tgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:6446673‑M1/8‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:55493670/1‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         >  1:13269753/1‑68 (MQ=255)
                                                             ggCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGAt        >  1:29402378/1‑67 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:19082660‑M1/65‑1 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:3055264‑M1/65‑1 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:3358875‑M1/65‑1 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:53616115‑M1/65‑1 (MQ=255)
                                                               cTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     >  1:4839642/1‑68 (MQ=255)
                                                                  |                                                                   
CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.