New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4316074 =	NA (NA)	21 (0.030) +G	17/110	NT	5.4%	noncoding (456/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	CP009273	4316093 =	378 (0.540)					noncoding (475/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

GTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4316134‑4316074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG  >  CP009273/4316093‑4316152                                                              |                                                              GTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTTCGCAGCAACCGGaa                                                         >  1:24446807/1‑66         AGGCCTACAAATTCCCGCACCCTCCGTAGGCCGTATAACTCGTTTACGCCGCAGCC‑GCC‑AACGGAGa                                                >  1:45733668/1‑66            CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGT                                              <  1:8976196/67‑1            CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCAGCCGGCC‑TACGGAGGGT                                              <  1:26185013/67‑1             CTACAAATTCCCGCCCCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGC                                            <  1:47516386/68‑1               ACAAATACCCCCACCCTCCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGG                                          <  1:18029721/68‑1                 AAATACCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCAGCCGGCC‑TACGGAGGGTGCGGGA                                        <  1:54478061/68‑1                    TTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCAGCCGGCC‑TACGGAGGGTGCGGGAATT                                     <  1:43710286/68‑1                     TCCCCCCCCCTCCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTT                                    <  1:56297450/68‑1                           ACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGG                               >  1:20941703/1‑67                           ACCCTCCGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCC‑AACGGAGGGTGCGGGAATTTGTAGG                               <  1:15618696/67‑1                           ACCCTCCGTAGGCCGCATAAGGCGTCTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGG                               <  1:18812943/67‑1                            CCCTCCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCC                             <  1:39903691/68‑1                             CCTCCGTCCGCCGGATAAGGCGTTAACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCT                            <  1:54617875/68‑1                                  taAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTTACGGAGGGTGCGGGAATTTGTAGGCCTGATA                        >  1:33549476/3‑68                                      GCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGGGGGTGCCGGAATTTGTAGGCCTGATAAGAC                    >  1:55759561/1‑67                                      GCCGGATAAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAC                    >  1:8731683/1‑67                                             AAGGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC            <  1:57686477/68‑1                                               GGCGTTTACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCG           >  1:54973889/1‑67                                                 CGTTTACGCCGCATCCGGCC‑TACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTC         >  1:18372980/1‑67                                                      ACGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCA   >  1:14564287/1‑68                                                       CGCCGCATCCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG  >  1:20019357/1‑68                                                              |                                                              GTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4316134‑4316074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCC‑TACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAG  >  CP009273/4316093‑4316152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.