| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4316074 = | NA (NA) | 21 (0.030) +G |
17/110 | NT | 5.4% | noncoding (456/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4316093 = | 378 (0.540) | noncoding (475/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 378 total aligned reads displayed.
CAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATA > CP009273/4316038‑4316130 | cAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg < 1:54009780/68‑1 (MQ=31) caGCGTCGCATCAGGCAGGCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 1:18155112/67‑1 (MQ=16) aaGCGTCGCATCAGGCAGTCGGCCCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 1:17039403/68‑1 (MQ=18) aaGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 1:19387408/68‑1 (MQ=33) aaGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg > 1:37872988/1‑68 (MQ=33) aaGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg < 1:29430822/68‑1 (MQ=33) aGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg > 1:22087352/1‑68 (MQ=35) aGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAggg > 1:57116368/1‑68 (MQ=35) gCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt > 1:14341206/1‑68 (MQ=35) cGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCGGGCCTACGGAGGGt > 1:53718360/1‑67 (MQ=25) cGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt > 1:47226368/1‑67 (MQ=35) ggcGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:8926368/64‑1 (MQ=25) ggcGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:35109156/64‑1 (MQ=25) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:27276052/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:50197616/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:26185303/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:49212517/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:24581469/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:46285510/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:36478140/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:40348709/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:21955578/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:2121102/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:43877293/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:54326334/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:12481594/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:12582811/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:6943162/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:20928863/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:55070799/66‑1 (MQ=35) gTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc > 1:51055536/1‑68 (MQ=35) gTCGCATCAGGCAGTCGGAACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:39202636/66‑1 (MQ=25) gTCGCAACTGGCAGGCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGt < 1:31841308/66‑1 (MQ=11) cGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAACCGCCATATCCGGCCTACGGAGGGTGCgg > 1:46559320/1‑68 (MQ=255) cGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg > 1:35630192/1‑68 (MQ=35) cGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCgg < 1:34829724/68‑1 (MQ=35) gCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg < 1:5275228/68‑1 (MQ=35) gCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg < 1:1800653/68‑1 (MQ=35) gCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg < 1:13859736/68‑1 (MQ=35) gCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg < 1:44178341/68‑1 (MQ=35) gCATCAGGCAGTCGGCACCGGTTCCGGATGCGGCGTAAACGCCTTATCCTGCCTACGGAGGGTGCggg < 1:35991087/68‑1 (MQ=11) aTCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa < 1:38794917/68‑1 (MQ=35) aTCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa > 1:38446667/1‑68 (MQ=35) aTCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGaa > 1:4184370/1‑68 (MQ=35) tCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAt < 1:44350897/68‑1 (MQ=35) cAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAtt < 1:5724205/68‑1 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTTAACGCCTTATCCTGCCTACGGAGTGTGCGGGAATTTGt > 1:56501776/1‑68 (MQ=11) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:55785998/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:8472159/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:7310651/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:36959924/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:52128557/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:14640006/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:1973108/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:25525846/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:33940909/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:27668527/1‑68 (MQ=35) gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGt > 1:14979965/1‑68 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:45502066/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:42502862/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:45213482/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:38064578/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:13413924/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:28060255/65‑1 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa > 1:9419695/1‑68 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa > 1:42781230/1‑68 (MQ=35) cAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa > 1:43244553/1‑68 (MQ=35) cAGGCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAttt < 1:6519032/65‑1 (MQ=25) tCGGCACCGTTGCCGGATGCGGCGGAATCGGCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:50397665/68‑1 (MQ=11) cGGCACCGTTGCCGGATGCGGCGTAACCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:22648538/66‑1 (MQ=25) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:10006915/66‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:1168216/66‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:13024181/66‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:15623450/66‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg < 1:24019857/66‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAgg > 1:44687165/1‑66 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc < 1:3304549/68‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc < 1:23546137/68‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc < 1:22945161/68‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:17512878/67‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:41074801/67‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:10618793/67‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:34297197/67‑1 (MQ=35) cGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGc < 1:20714036/67‑1 (MQ=35) ggCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt < 1:30898141/68‑1 (MQ=35) ggCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt < 1:16231385/68‑1 (MQ=35) ggCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt < 1:7591972/68‑1 (MQ=35) ggCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCt < 1:28611413/68‑1 (MQ=35) aCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGa < 1:55950104/67‑1 (MQ=35) aCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGa < 1:58018687/67‑1 (MQ=35) aCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAt > 1:51849636/1‑68 (MQ=35) aCCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAt > 1:30436052/1‑68 (MQ=35) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGATTTTGTAGGCCTGATa > 1:48377436/1‑68 (MQ=18) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:20248908/1‑68 (MQ=33) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:18528284/1‑68 (MQ=33) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:16588051/1‑68 (MQ=33) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:39626572/1‑68 (MQ=33) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:11287604/1‑68 (MQ=33) ccGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:49520163/1‑68 (MQ=33) ccGTTGCCGGATGCGCCGAAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa > 1:29862596/1‑68 (MQ=255) | CAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATA > CP009273/4316038‑4316130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |