| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 523 (0.750) | 19 (0.030) | 8/88 | NT | 4.5% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 405 (0.740) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 278 total aligned reads displayed.
AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCAACCATTACGTTTTACTCT < 1:4586899/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:33777419/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:28821158/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:14298243/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:48950893/68‑1 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCCCCACAGTCATCCATTACGTTTTACTCTGTCA > 1:17837662/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:23795919/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:24586792/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:15025903/1‑68 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:52199030/1‑68 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:41037475/1‑67 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:15370578/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:54833329/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:20705792/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:29251862/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:18541358/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:25010993/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:34272490/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:37810024/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:40549038/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCCGTCAGCCG > 1:4030610/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGACATCCATTACGTTTTACTCTGTCAGCCG > 1:21464177/1‑67 CCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC > 1:17253139/1‑67 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:33126307/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:50898700/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:22698481/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:18401992/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:5243574/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:20318482/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:56050582/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:11080363/66‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:13662850/66‑1 CACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCGCATGGCCGTAGAATGCCCGCCAGGGCGGCg > 1:32715696/1‑67 ACGTTTTACTCTGTCAGCCGCCCGAATGGACGGAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACG > 1:53046516/1‑68 GTTTTACTCTGTCAGCCGCCCGTATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAGAACGTA > 1:12297664/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:30930341/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:5812079/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:33530812/1‑68 ACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGA > 1:26879612/1‑68 TCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:33520301/1‑68 gTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG < 1:13275518/66‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:51217630/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:43284984/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:45203450/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:34825341/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:14565758/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:14906219/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:6522070/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:19413676/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:18777644/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:30200333/1‑66 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:44143474/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:6672678/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:2742035/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:44966884/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:47008838/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:37894252/68‑1 GTCAGCCGCCCGAATGGACGTAGAATCCCCGCAAGGGCGGCTGGCAGAGTAAAACGTAATGGATGACT < 1:37276020/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:39173671/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:1258190/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:10244478/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:7697458/68‑1 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAATCGTAATGGATGCCTGTGG > 1:50584611/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTag > 1:54499939/1‑66 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:47800064/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4759171/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:54088982/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:9075478/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:56921601/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:41826968/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:40842686/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:30759975/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:31414462/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:23203676/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:38291353/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:16342550/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:35949775/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:16800363/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACGGTGG > 1:29557953/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:15840860/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:36777716/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:38988456/1‑68 CCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT > 1:46176262/1‑68 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:39640643/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:26060649/67‑1 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:6079439/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:6116658/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:11392269/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:380765/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:47938732/1‑68 CCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCG > 1:36217841/1‑68 CCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGA > 1:32163695/1‑68 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:30102071/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:5576078/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:56649152/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:21901309/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:48388151/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:42660045/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:14059510/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:43727407/68‑1 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |