| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 523 (0.750) | 19 (0.030) | 8/88 | NT | 4.5% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 405 (0.740) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 1076 total aligned reads displayed.
CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 | aTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:11060037/68‑1 (MQ=255) aTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:11993001/68‑1 (MQ=255) aTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:21501220/68‑1 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:25566013/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:49517906/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:53085365/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:34843645/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:55023658/1‑68 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCgtg < 1:29026945/67‑3 (MQ=255) tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCa < 1:19359233/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:41643025/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:18642321/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:16348972/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:37182968/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:11659852/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:45240416/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:45973750/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:53721649/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:3767146/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:43779730/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:48939741/1‑66 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:29884075/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:56648625/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:22333356/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:24806408/1‑68 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:46436661/1‑67 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:34394825/1‑67 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:9196271/1‑67 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:35675217/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:40294528/1‑68 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:42692331/67‑1 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCAt > 1:7519522/1‑68 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:48388151‑M2/68‑2 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:56048708‑M2/68‑2 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:30158184‑M2/68‑2 (MQ=255) accccAGTCATCCATTACGTTTTACTCTGGCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcgg > 1:40674836‑M2/1‑62 (MQ=255) accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:26060649‑M2/67‑6 (MQ=255) accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:30819269‑M2/67‑6 (MQ=255) ctacagtCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:54499939‑M2/3‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:47800064‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:31414462‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:610295‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:16800363‑M2/1‑61 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCGTGCGGGCATTCTACGTCCATTCgggcggctg < 1:1534837‑M2/68‑10 (MQ=255) aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac < 1:38169405‑M2/68‑12 (MQ=255) aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac < 1:47008838‑M2/68‑12 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:43284984‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:40898205‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:17662678‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:7263409‑M2/68‑13 (MQ=255) cATCCATTAAGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAAc < 1:28008971/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagt > 1:57082212‑M2/1‑52 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:19075285/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:44434197/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:38679773/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:10314035/1‑68 (MQ=255) aacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGtt < 1:50953953‑M1/53‑1 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:877798/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:6423007/1‑68 (MQ=255) cggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTa < 1:20732323‑M1/55‑1 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:39291985‑M2/1‑47 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:14825059‑M2/1‑47 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:5944063/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:8104364/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagttaaacgta > 1:12342683‑M1/1‑21 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:29513351/1‑68 (MQ=255) ttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAGGCCGtt > 1:33350039/1‑68 (MQ=255) ttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGtt > 1:24319419/1‑68 (MQ=255) aCTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatgga > 1:18170754‑M1/1‑16 (MQ=255) aCTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatgga > 1:26879612‑M1/1‑16 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:27428247/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:13664678/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:39731827/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTCCGTCCATTCGGGCGGCTGACAACCGGTTAAGCCGTTTCaa > 1:39012539/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:14129933/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:33680351/1‑68 (MQ=255) ctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:52136894/1‑67 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:22791935‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:37946404‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatg > 1:42351214‑M1/1‑12 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:47574641‑M1/67‑1 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:36633874‑M1/67‑1 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgccagagtaaaacgttatggatgcctgtgg > 1:33044374‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaatcgtaatggatgcctgtgg > 1:50584611‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:15703022‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:23203676‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgacggtgg > 1:12912934‑M1/1‑7 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:32648236‑M1/68‑1 (MQ=255) cgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggt < 1:51419787‑M1/67‑63 (MQ=255) cgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggt < 1:30634501‑M1/67‑63 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:20030794‑M1/1‑67 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:10016784‑M1/1‑67 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:52487146‑M1/1‑4 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGCCAACCGTTTAAGCCGTTTCAAACGTTGCtt < 1:6616172‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:14467453‑M1/67‑1 (MQ=255) CCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa > 1:2383982‑M1/1‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:55583461‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:21901309‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:32139456‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:3622351‑M1/68‑68 (MQ=255) | CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |