| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 675 (0.960) | 45 (0.080) | 12/90 | NT | 8.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 479 (0.850) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 190 total aligned reads displayed.
GATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641387‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641377‑1641440 GATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCC > 1:17470010/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:8212237/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:2644865/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:24948612/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:57876233/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:28053202/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:29126700/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:36709428/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:40626063/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:17341968/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:43007652/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:44794585/1‑68 gCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:47511047/67‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:11500154/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:11790507/1‑68 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:22712660/68‑1 TCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:15639194/68‑1 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:17959368/1‑68 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:17797700/1‑68 CTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:6933757/1‑68 TAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAAC > 1:5826990/1‑68 AAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACG < 1:35814249/68‑1 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:41823730/1‑68 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:30395958/68‑1 AGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:43955826/68‑1 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:3376244/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:44892379/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:38062129/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:26985904/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:43333705/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:11261349/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:25947906/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:24353455/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:16663438/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:1953272/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:7446336/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:19979316/1‑67 GTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:21537215/1‑67 GTCGCGTTTCTGGTGTTCATTTTAGGGTGGTTTGTTACTTGTTTTACAGGGGATATGCCAGAAACGC > 1:5909167/1‑67 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:51842268/68‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:6730040/68‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:33542705/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:17201826/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:56894137/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:46201256/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:12590527/66‑1 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:32230539/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:33418048/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:50246251/1‑65 CGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:39591305/1‑65 CGCGTTTCTGGTGTTCAATTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:2242490/66‑1 CGCGTTTCCGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:28031425/66‑1 TTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAG < 1:25955048/68‑1 TCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGA < 1:10994360/68‑1 TCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGA < 1:14071106/68‑1 GTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:13492282/68‑1 TCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACC < 1:52158647/67‑1 TCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACC < 1:55701217/67‑1 TCATTGTCGGGTGGTTTGTTACTTGTTTTACCGGGCATATGCCAGTAACGCGACTTAAGAATCTACC < 1:47860701/67‑1 CATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCT < 1:23374815/68‑1 CATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCT < 1:21541949/68‑1 CATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCT < 1:49407540/68‑1 ttaTCGGGTGGTTTGTTACTTGTTTTACCGGGGATAAGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:53263241/65‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:38289279/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:48259357/68‑1 TTTTCGGGTGGGTTGTTACTTGGTTTACCGGGGATATGCCAGCAACGCGACTTAAGAATCTACCCTAT < 1:52756092/68‑1 TTTCCGGGGGGTTTGTTACTTGTTTTACCCGGCATAGGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:40329309/68‑1 TTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGA < 1:42212826/68‑1 gGGTTTGTTACTTGATTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:46969903/66‑1 TTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:37992183/68‑1 TTGTTACTTGTTTTACCGGGGAAATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:51653665/68‑1 TTGTTACTAGTTTTCCCGGGGAAATGCCACAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:22018926/68‑1 TTTCCCGGGCATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGA < 1:44442218/67‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA > 1:9137586/1‑68 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA < 1:27888428/68‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA > 1:18136246/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT < 1:45772811/68‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:57763905/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:24543819/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:29490103/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:20809833/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:53625549/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:31822220/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:35000509/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:36141496/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:3714997/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:12690789/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:19636272/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:41126382/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:41843855/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATC < 1:7936124/66‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCATGGTTTCAATCTT > 1:44107626/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:27249752/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:24167212/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:5514808/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:54109796/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:32621921/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:42668969/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAGCGTGGTTTCAATCTTTT > 1:29110195/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCCATCTTGGTTTCAATCTTTa > 1:51233494/1‑67 GATTCTTAAGTCGCGTTTCTGGTGTTCATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641387‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > CP009273/1641377‑1641440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |