| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 675 (0.960) | 45 (0.080) | 12/90 | NT | 8.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 479 (0.850) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 664 total aligned reads displayed.
GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641312‑1641443 | GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:3376244‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:27926441‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:43333705‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:7446336‑M1/1‑67 (MQ=255)GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACt < 1:43955826‑M1/68‑1 (MQ=255) GTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa > 1:17753121‑M1/1‑68 (MQ=255) ttctggtgttcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAg < 1:25955048‑M2/7‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAagc < 1:47511047‑M1/68‑2 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:22712660‑M1/68‑1 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:49800579‑M1/68‑1 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:2644865‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:5857098‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:24948612‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:17341968‑M1/1‑68 (MQ=255) GGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa < 1:20496658‑M1/66‑1 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:12838508/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:55064944/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:45624066/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:6413661/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:31783928/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:44149403/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:12604792/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACAACCCGAAAATGAACAAAAGAAAAGAGACTTAAGAATCt > 1:23029345/1‑67 (MQ=255) aatatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGCACACCAGAAACGCGACTTAATAATCt > 1:56698337/2‑67 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTa < 1:52384054/67‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:41172305/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:11124063/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:16854842/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:35921781/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:11495832/68‑1 (MQ=255) tcattttcgggtggtttgttacttgttttaccggggataacccagaaacgcgACTTAAGAATCTAcc < 1:38246935‑M2/15‑1 (MQ=255) tcattgtcgggtggtttgttacttgttttaccgggcatatgccagtaacgcgACTTAAGAATCTAcc < 1:47860701‑M2/15‑1 (MQ=255) ccccGGTATAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa < 1:8611470/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:56125435/1‑68 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:20047219/1‑68 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa < 1:49152150/68‑1 (MQ=255) ttttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTAt < 1:24609304‑M2/19‑1 (MQ=255) ttttcggggggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTAt < 1:38763137‑M2/19‑1 (MQ=255) ttttcgcggggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTAt < 1:23721634‑M2/19‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTGCCCTAt < 1:28338055/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:39895787/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:4686397/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:46143835/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:10045045/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:2700657/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt > 1:24408383/1‑68 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:48493988/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:1426968/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:12103406/68‑1 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:51398458/1‑68 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATgg > 1:9218283/1‑68 (MQ=255) aaaGAAGTAAGAAACCACCCGAAAATGAACACGAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:1956868/68‑1 (MQ=38) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:6876966/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:37494750/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:14501932/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:1523976/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:44728535/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:18780635/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:51800192/68‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGata > 1:10782079/1‑68 (MQ=255) cAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:42914889/1‑68 (MQ=255) cAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:32444915/1‑68 (MQ=255) ttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGc < 1:37992183‑M2/31‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:16263831/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:41969883/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:21115971/68‑1 (MQ=255) tAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:42272717/61‑1 (MQ=255) aaCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCAc < 1:36893887/67‑1 (MQ=255) aaCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCAc < 1:5412398/67‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:21987013/68‑1 (MQ=255) aaaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATg > 1:35321249/1‑51 (MQ=255) aaCCCCCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:39494130/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:27307430/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:51105299/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:54571652/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:34394722/68‑1 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:29984154/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:33078611/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:40443304/1‑68 (MQ=255) ccaccCGAAAATGAACACCATAAACGCGACTTAAGAATCTACCATATTAATGGATATGCACTAAACCg > 1:41384004/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:5563342/1‑68 (MQ=255) caccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGa < 1:52942180/68‑1 (MQ=255) ccGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATc < 1:36389015/68‑1 (MQ=255) cGAAAATGAACACCAGAAACGCGACTTCAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCg > 1:13984495/1‑68 (MQ=255) cGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCg > 1:13508146/1‑68 (MQ=255) gAAAATGAACACCAGAATCGCGACTTAAGAATCTACCCTATGAATGTATATGCACTCAACCGAATCGa < 1:31270123/68‑1 (MQ=255) gAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:30404818/68‑1 (MQ=255) gAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:57535562/68‑1 (MQ=255) gAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa < 1:21473750/68‑1 (MQ=255) aaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGAt < 1:34642078/67‑1 (MQ=255) aaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCt > 1:1169111/1‑68 (MQ=255) aTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCCCTCAACCGAATAGAGCtt > 1:44905450/1‑68 (MQ=255) aTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCtt > 1:27614588/1‑68 (MQ=255) tGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTg > 1:42705101/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:28905819/1‑68 (MQ=255) ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCa > 1:18136246‑M2/12‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATc < 1:7936124‑M2/60‑1 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:53625549‑M2/7‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:29490103‑M2/7‑68 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:24167212‑M2/5‑68 (MQ=255) | GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641312‑1641443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |