BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3462138	786 (1.120)	43 (0.090)	15/78	NT	5.7%	coding (1075/2694 nt)	chiA	periplasmic endochitinase
*	?	CP009273	3462463 =	873 (1.790)	43 (0.090)	15/78	NT	5.7%	coding (750/2694 nt)	chiA	periplasmic endochitinase

Only 100 of 736 total aligned reads displayed.

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGCCCCAAC                                                                                    >  1:32459252/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:29790631/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:50725598/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:24489312/1‑67

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:37487690/1‑68

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:36127358/1‑68

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:1726133/1‑68

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  >  1:28563385/1‑68

   CTCGAGACGCCATGGGTTATTGGAGTATTCAGCTGTGGAACCCCGTGGGCAATCTTTAGCCCCAACCC                                                                                  >  1:54273837/1‑68

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:43555400/68‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:2343331/67‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:16804279/67‑1

       AGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCA                                                                              >  1:30803140/1‑68

        GACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCA                                                                              <  1:495883/67‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:27216183/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           <  1:20850909/68‑1

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:32166775/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:7829782/1‑68

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:53873304/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:17594957/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:7546423/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:20124665/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:28087338/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:30376350/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:6920617/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:6453348/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:40314689/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:13001193/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:23930360/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:12359419/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:29173907/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCATGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:32922308/68‑1

                GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT                                                                     <  1:15640256/68‑1

                  GTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCACGCGTTCTTAT                                                                   >  1:10091341/1‑68

                             cTTCAGCTATGGTACCCCGTGGGCAATCTTTAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCG                                                        <  1:26251230/67‑1

                              ttgAGCTCTGGAACCGCGTGGGCAATCTTAAGACCCTACCCACCAGGCGTTCTTATAAATGCCGCCGT                                                       <  1:33168471/65‑1

                              cgaAGCTCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTATAAATGCCGCCGT                                                       <  1:39147810/65‑1

                                      TGGCACCCCCTGGGCAATATTTCGCCCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAT                                                <  1:36649681/67‑1

                                        GTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:11818095/41‑1

                                               GTGGGCAATCTTCAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAT                                      <  1:40752686/68‑1

                                                                   ACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACC                  <  1:3371870/68‑1

                                                                    CCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCT                 <  1:13268310/68‑1

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                <  1:38683609/68‑1

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                <  1:51228111/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:4880841/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:54606343/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:41398006/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:35909381/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:51462630/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:25264774/68‑1

                                                                      CACCACGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:31459748/68‑1

                                                                        CCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCC             <  1:46787963/68‑1

                                                                         CAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCA            >  1:19257311/1‑68

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATTTAGAAGAACCTTCCTGACCTTTCCAG           >  1:47828148/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGCCCTTTCCAG           >  1:8832131/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:41047989/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:21539552/1‑67

                                                                           GGCGTTCTTATAAATGCCGCCGATATACATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:35281782/1‑67

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:4530446/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:45587070/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:8402751/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:57368830/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:16336907/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:48270078/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:46401558/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:52051796/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:53245761/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:44603705/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:41930739/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:15083871/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:18636807/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:21375722/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:6015651/66‑1

                                                                             CGTGCTTATAATTGCCGCCGTTATAGATACCGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:57760960/66‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:42564984/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:39863934/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:38289307/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:34390875/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:11548986/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:50284306/67‑1

                                                                                TCTTATTAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:11201474/68‑1

                                                                                TCTTATAAATGGCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:27610522/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAATCTTCCTGACCTTTCCAGGCTACT     <  1:56611912/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:10364567/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:52729938/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:51630323/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:46003713/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:35511943/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:26631271/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:14097111/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:10619226/68‑1

                                                                                TCTTATAAATACCGCCGTTATAGATAACGTACCATGTTGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:47291099/68‑1

                                                                                  TTATGAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   >  1:56137640/1‑68

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:55342741/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:23079713/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:19513353/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:22670726/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:22041535/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:13832180/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:9489929/67‑1

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.