| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 786 (1.120) | 43 (0.090) | 15/78 | NT | 5.7% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 873 (1.790) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 1370 total aligned reads displayed.
GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 | ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:10398277/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:35362489/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:52455121/1‑68 (MQ=255) tATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaa < 1:8223378/68‑1 (MQ=255) tATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaa < 1:5876237/68‑1 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaa < 1:14025917/68‑1 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaa < 1:51404337/68‑1 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaa < 1:46093754/68‑1 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaa < 1:3453955/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaaaa > 1:13458874/1‑66 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:52790747/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACAAGGAGTTCTTCTAAACa > 1:14655531/1‑68 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGCGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa > 1:42868558/1‑68 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACagt > 1:19057025/1‑65 (MQ=255) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc < 1:4412157/66‑1 (MQ=255) ttCAGCTCTGGTACCCCGTGGGCAATATTTAGACCCAACCCACCAGGCGTTCTTataaatgccgccgt < 1:1158891‑M1/68‑15 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:43404884/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:11937430/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:17040904/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:1969659/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:57260335/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:15361374/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:39558489/65‑1 (MQ=255) tgctACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATa < 1:54366157/65‑1 (MQ=255) tGGCACCCCCTGGGCAATATTTCGCCCCAACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:36649681‑M1/67‑22 (MQ=255) ggTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATaa < 1:8613413/68‑1 (MQ=255) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACa < 1:1263834/67‑1 (MQ=255) ccccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg < 1:5382419/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGTAAATAACATgg > 1:44550216/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:9458113/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:644622/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:33759616/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAGTACCGTTTAAAATAACTTgg > 1:34781902/1‑68 (MQ=38) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTTTAAAGAAGGCCATTTAAGATAACATggga > 1:16445703/1‑66 (MQ=25) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTTAAAATAACTTGGTa > 1:47108757/1‑68 (MQ=255) gTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTaa > 1:20246438/1‑68 (MQ=255) ggCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt > 1:25176638/1‑68 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTataaatgccgccgttatagataacgtaccatgtag > 1:22975930‑M1/1‑33 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAATATAACATGGTAAAtt > 1:38110872/1‑67 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt > 1:27938568/1‑67 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAAAGTACCATTGAAAATAACATGGGAAAtt > 1:47549446/1‑67 (MQ=39) gCAATCTTTAGACCCAACCCACCAGGCGTTATTCTAAAAATTAACATTGAAAATAACATGGTAAAttt > 1:5659614/1‑68 (MQ=255) cAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAttt < 1:21053587/67‑1 (MQ=255) cTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCt > 1:22183669/1‑67 (MQ=255) tttAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTAc < 1:27185650/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:23500424/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:41695211/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:28279936/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:18549446/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:39939309/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:46565847/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:30925464/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:3290168/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:48031491/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:10826844/68‑1 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:7558898/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:36146920/1‑66 (MQ=255) cccaacccaCCAGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaacctt > 1:26437349‑M1/1‑21 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:721013/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:16032147/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAAAATTACCATTGAAAATAACATTGTAAATTTCGCTACCtt > 1:31435998/1‑65 (MQ=39) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt < 1:51228111‑M1/68‑54 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt < 1:24067672‑M1/68‑54 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt > 1:32445697‑M1/1‑15 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGTCCGc < 1:45555534/68‑1 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGc < 1:37532818/68‑1 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:33324848‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:51812909‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:9158876‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:29150159‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:4978555‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:38905692‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:55691722‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:27465420‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:407627‑M1/68‑55 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:48726341/68‑1 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:21326576‑M1/1‑7 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:2868000‑M1/1‑7 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:30339637‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:57715327‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:53256381‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:29798066‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:31899885‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:38437889‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:50708203‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:41213576‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:42185570‑M1/66‑60 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:40351494/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:1002558/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:12988003/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:45129510/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:50413127/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCt > 1:21547317/1‑68 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:55102767‑M1/67‑62 (MQ=255) gTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCGACGCt < 1:1767792/67‑1 (MQ=255) tCTTattaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:11201474‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:49252779‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:35761256‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:25968942‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctac < 1:24799362‑M1/67‑64 (MQ=255) | GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |