| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 625 (0.890) | 38 (0.060) | 9/100 | NT | 6.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 599 (0.960) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 195 total aligned reads displayed.
TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921452‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:8672878/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:14825816/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:26479643/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGC < 1:9193609/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:56850474/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:39968399/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:27727571/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:26953183/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:18564847/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:24212781/1‑67 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:10646811/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:6132555/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:49308593/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:45937720/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:43728290/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:29722530/68‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:19622162/68‑1 AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC > 1:12356443/1‑68 GTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC < 1:38311067/65‑1 GTGGAGTAGGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC < 1:57292866/65‑1 GCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACA > 1:20287021/1‑67 CCTTCTCTGCTGTAATAATTTATAGCCGCCTGCGCAGACGCTGGCGGCGATTAATTATTACCGCAGAG > 1:44261281/1‑68 CTTCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGAGAAATTTTTACAGCAGAGA > 1:43295899/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAATTTTTTACAGCAGAGAAGG > 1:57886288/1‑67 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTTTTACAGCAGAGAAGGG > 1:33750250/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:10612434/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:43640670/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:3071996/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:28452021/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:26787088/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:1077397/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGG > 1:18672850/1‑67 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCGGGCGGCGCTAAATTATTACAGCAGAGCAGGG > 1:6375766/1‑68 GCTGTAATAATTTATCGCCGCCTGCTCAGCCGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:14538073/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGACGGGAC > 1:32772361/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:25895911/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:27371265/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:5323134/1‑67 TGTAATAATTTATCGCCGCCTGCTCAGCCGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGC > 1:13979318/1‑67 AATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTC > 1:43558156/1‑68 aaCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA < 1:13222350/66‑1 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:14265314/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:45200561/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:34234966/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:22024084/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTAATACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:30253277/1‑67 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:23182076/67‑1 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:3933690/67‑1 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:55135774/1‑65 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:7956879/1‑65 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:57494249/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:53430222/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:21231122/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:56082264/68‑1 CTGCTCTGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:15689901/68‑1 CTGCTCAGACGCTGGTGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:4125717/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTCTTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:32082191/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:46892690/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:46231821/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:46989731/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:4705004/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:48352350/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:50538583/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:11827481/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:5183829/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:52973949/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:39747934/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:7544672/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:31104130/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:25516569/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:26624958/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:17407903/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:27817932/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:25094465/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:18845912/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:28948529/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:29097594/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:23686659/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:22902121/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:15417758/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:3004903/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:32413213/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:33354983/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:33984321/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:35247475/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:35854387/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:36153647/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:37599658/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:21169073/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:43437186/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:42056917/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:42206361/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:42543134/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:19871156/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:56321875/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:5491324/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG > 1:54633546/1‑67 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:3796206/67‑1 CTGCTCAGACGCGGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:56226486/68‑1 CTGCTCACACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:41778772/68‑1 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921452‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |