| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 625 (0.890) | 38 (0.060) | 9/100 | NT | 6.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 599 (0.960) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 1093 total aligned reads displayed.
AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 | tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:7839750/1‑67 (MQ=255) tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:28290667/1‑67 (MQ=255) tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:5714061/1‑67 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:14555274/1‑68 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:31486674/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:50512590/67‑1 (MQ=255) aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:39779471/1‑65 (MQ=255) aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTc < 1:56611790/67‑1 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:48849969/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:19723068/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:7157287/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:14221661/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:22700135/1‑68 (MQ=255) ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:55580557/1‑68 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:21169073‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:49698786‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:42206361‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:26585692‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:29097594‑M2/68‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAgg > 1:56090285‑M2/1‑65 (MQ=255) gctgctGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcg < 1:3933690‑M2/67‑5 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTATTAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:30253277‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt < 1:46102901/68‑1 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCtt < 1:24322437/68‑1 (MQ=255) gTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGc < 1:12385578/68‑1 (MQ=255) gggagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc > 1:21496945/3‑67 (MQ=255) cgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATccc > 1:12938083/1‑68 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattatt > 1:43558156‑M2/1‑51 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:9518636/68‑1 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:17786081/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:43817468/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:6522491/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:515763/1‑68 (MQ=255) agCGTCCCGTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:11495907/1‑68 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:20431263/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:37941721/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:3474869/1‑67 (MQ=255) gTCCCTTCTCTGGTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTAt < 1:44339201/66‑1 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:11839835‑M2/1‑45 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:3071996‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:10612434‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCaaa > 1:38492385/1‑68 (MQ=255) cccTTCTCTCCTGTAATAAATTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:830971‑M2/1‑43 (MQ=255) ccATCACTGCTGTAATACTTTATCGCCGCCCGCGTCTGCGCAggcggcgataaattattacagcaga > 1:18587002‑M2/1‑42 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:45860042/68‑1 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:22232167/68‑1 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:53291409/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:27900927/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:4039923/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:47331817/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:19108444/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:13928672/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:53920931/68‑1 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:57539500/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:20131946/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:10023551/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:41965965/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:6029212/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:16264572/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:33811427/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:52175441/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:29754471/68‑1 (MQ=255) tgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGa < 1:17344139/68‑1 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:550333/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:43138525/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:27416897/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:37530444/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:548492/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:3523200/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:44802484/67‑1 (MQ=255) ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATc < 1:35884140/68‑1 (MQ=255) ataatTTATCGCCGCCAGCGGCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATc < 1:28820192/68‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:878670/1‑68 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:11051065/1‑68 (MQ=255) aatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGa > 1:16811016/1‑68 (MQ=255) tttATCGCCGCCAGCTTCTGAGCAGGCGGCTGAGCATCAGGGTATCACAGCGCCAGATAGTCTCGaaa > 1:15657664/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:45211077/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:2688307/1‑68 (MQ=255) tATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAAt > 1:23225942/1‑68 (MQ=255) tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATTTGATCGAAAATgc > 1:36514286/1‑68 (MQ=255) tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc > 1:2614250/1‑68 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagca > 1:15083793‑M1/1‑6 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagca > 1:25557143‑M1/1‑6 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc < 1:51115092/68‑1 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc > 1:42633854/1‑68 (MQ=255) ccAGCGTCTGAGCAGGCGGCTTCGAATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatga > 1:35456749/1‑68 (MQ=255) ctgctcagacgctggtggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:4125717‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattcttacagcagagaagggacgctctcgcgaacagcagctggc < 1:32082191‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:52973949‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:43411864‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:25094465‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:23891628‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:34209407‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:3305370‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:13598423‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:48352350‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:46998274‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:46802219‑M1/68‑68 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:33362053/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:32599816/68‑1 (MQ=255) | AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |