New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =629 (0.900)40 (0.070) 13/96 NT 7.1% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 509 (0.850)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 808 total aligned reads displayed.

TGGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGT  >  CP009273/3999108‑3999242
                                                                   |                                                                   
tagctccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaac                                                                     <  1:3557617‑M1/1‑1 (MQ=255)
  gctccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAg                                                                   <  1:33980087‑M1/3‑1 (MQ=255)
  gctccggactccagattcaacacttccgcctgcgccacattcaccccgactgcctgaaataaaaaCAg                                                                   <  1:12978137‑M1/3‑1 (MQ=255)
    tccggactccagattcaccacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                 >  1:26486871‑M1/64‑68 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                 <  1:41364745‑M1/5‑1 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                 <  1:29531010‑M1/5‑1 (MQ=255)
    tccggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgc                                                                 >  1:28139484‑M1/64‑68 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                  <  1:5074547/67‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                  <  1:32830510/67‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                  <  1:47879086/67‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAgg                                                                  <  1:16301444/67‑1 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                 >  1:43941355/1‑68 (MQ=255)
    aaaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                 <  1:10746936/68‑1 (MQ=255)
     aaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                 >  1:47355736/1‑67 (MQ=255)
     aaTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgc                                                                 >  1:22747559/1‑67 (MQ=255)
      cggactccagattcaacacttccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGgcgc                                                               >  1:31117407‑M1/62‑68 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                               <  1:10082446/68‑1 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                               <  1:28430840/68‑1 (MQ=255)
      aTCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGgcgc                                                               <  1:24036425/68‑1 (MQ=255)
       tCTGGAATCCAGCATCCAGGATTTCCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCt                                                              <  1:13457887/68‑1 (MQ=255)
        cTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTg                                                             <  1:12077918/68‑1 (MQ=255)
        cTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTg                                                             <  1:24469821/68‑1 (MQ=255)
             aTCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAAt                                                        >  1:43072579/1‑68 (MQ=255)
                    aTCCAGGATTACCCTCTCAGAGACTAAAAGCAGTTCAGTTTCTCCCGCAGGCGCTGAAAATAGAGcca                                                 >  1:37763753/1‑67 (MQ=255)
                     tCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTg                                                <  1:39454248/68‑1 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                               >  1:27742565/1‑68 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                               <  1:23015494/68‑1 (MQ=255)
                      ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                               <  1:5327632/68‑1 (MQ=255)
                       cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCtttt                                              <  1:34142422/68‑1 (MQ=255)
                          tccgcctgcgccacattcaccccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGttttt                                           <  1:21411351‑M1/27‑1 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                             <  1:11192327/65‑1 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGttt                                             <  1:44343043/65‑1 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:52443007/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:4208311/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:31717521/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:56050773/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:19702212/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:12558048/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:15065075/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:22466471/1‑68 (MQ=255)
                           aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                          >  1:52832313/1‑68 (MQ=255)
                            ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                         <  1:29844972/68‑1 (MQ=255)
                            ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                         >  1:38701982/1‑68 (MQ=255)
                               cccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTc                                      >  1:57412801/1‑68 (MQ=255)
                               cccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTc                                      >  1:34956243/1‑68 (MQ=255)
                                ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                     >  1:36848745/1‑68 (MQ=255)
                                ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                     >  1:40493046/1‑68 (MQ=255)
                                ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                     >  1:18179916/1‑68 (MQ=255)
                                 ctctCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                    >  1:7795052/1‑68 (MQ=255)
                                 ctctCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAg                                    >  1:56901407/1‑68 (MQ=255)
                                    tcAGATACTAAAAGCATTGCAGTTTCTCGCTCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                 <  1:30264366/68‑1 (MQ=255)
                                    tcAGAGACTAAAAGCATTTCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                 <  1:48726063/68‑1 (MQ=255)
                                    tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                 >  1:37280682/1‑68 (MQ=255)
                                      agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                >  1:19228705/1‑67 (MQ=255)
                                        agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                             >  1:38247740/1‑68 (MQ=255)
                                         gaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAAt                               <  1:50405169/65‑1 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCTATCggg                           >  1:6342101/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:5967590/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:10451649/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:8748884/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:8402601/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:54266864/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:11722718/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:14081420/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:15667580/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:1678634/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:17167387/1‑68 (MQ=255)
                                          aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           >  1:27019707/1‑68 (MQ=255)
                                           cTAAAAGCATTGCAGTTTGTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           <  1:30748627/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                          <  1:39915218/68‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           <  1:6706237/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           <  1:19899052/67‑1 (MQ=255)
                                           cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           <  1:51438090/67‑1 (MQ=255)
                                           cTAAAACCATTGCAGGTGCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                           <  1:51906427/67‑1 (MQ=39)
                                              cccgattgcctgaaataaaaaCAGGCGCTGATAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                       <  1:33406547‑M1/47‑1 (MQ=255)
                                              aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                       <  1:54722953/68‑1 (MQ=255)
                                               ccgattgcctgaaatagaaaCAGGCGCTGAAAATAGCGCCTGTTATTATTTCAGGCAATCGGGGTGaa                      <  1:26718663‑M1/48‑1 (MQ=255)
                                               aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                      <  1:20532485/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     <  1:35977968/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     <  1:4573457/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     >  1:41727919/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     >  1:42762426/1‑68 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     <  1:53573466/68‑1 (MQ=255)
                                                aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                     >  1:49795301/1‑68 (MQ=255)
                                                      gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgcg               <  1:44971994/68‑1 (MQ=255)
                                                      gCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                >  1:17769565/1‑67 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg           <  1:36364010/67‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg           <  1:46618483/67‑1 (MQ=255)
                                                           ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc          <  1:9492133/68‑1 (MQ=255)
                                                             ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGATTGTGGCGCAGGCgg        >  1:21934418/1‑68 (MQ=255)
                                                             ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg        >  1:18664480/1‑68 (MQ=255)
                                                              tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa       <  1:14514996/68‑1 (MQ=255)
                                                              tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa       <  1:25119391/68‑1 (MQ=255)
                                                                gcgcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg     <  1:7211242/68‑1 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg   <  1:55430384/68‑1 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg   >  1:49062422/1‑68 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg   <  1:46294731/68‑1 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg   >  1:21224141/1‑68 (MQ=255)
                                                                  gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt    <  1:48407399/67‑1 (MQ=255)
                                                                  aCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtg   <  1:25712405‑M1/67‑1 (MQ=255)
                                                                   |                                                                   
TGGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGT  >  CP009273/3999108‑3999242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.