New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3999963816 (1.170)32 (0.050) 8/98 NT 5.2% coding (740/1830 nt) recQ ATP‑dependent DNA helicase
?CP009273 = 4000007 447 (0.730)coding (784/1830 nt) recQ ATP‑dependent DNA helicase

Only 100 of 1160 total aligned reads displayed.

ATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGG  >  CP009273/3999897‑4000029
                                                                  |                                                                  
aTCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCcgcgcg                                                                   >  1:56878105/1‑68 (MQ=255)
   tgTTGAGCCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa                                                                <  1:28503093/67‑1 (MQ=255)
      tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa                                                                <  1:52653711/65‑1 (MQ=255)
      tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt                                                              <  1:23306227/67‑1 (MQ=255)
      tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt                                                              <  1:30334960/67‑1 (MQ=255)
      tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt                                                              <  1:43318923/67‑1 (MQ=255)
       gATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTag                                                            >  1:33244834/1‑68 (MQ=255)
       gATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTag                                                            >  1:12507240/1‑68 (MQ=255)
          gcgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         <  1:25176838/68‑1 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:14844739/1‑67 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:21082710/1‑67 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:57396538/1‑67 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:46547349/1‑67 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:24563012/1‑67 (MQ=255)
           cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag                                                         >  1:29832024/1‑67 (MQ=255)
               aCGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACAcc                                                    <  1:53157790/68‑1 (MQ=255)
                   gCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCt                                                 >  1:38478926/1‑67 (MQ=255)
                   gCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCt                                                 >  1:35463235/1‑67 (MQ=255)
                        aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:56399394/1‑67 (MQ=255)
                        aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:55125172/1‑67 (MQ=255)
                        aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:57758629/1‑67 (MQ=255)
                        aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:26341782/1‑67 (MQ=255)
                         aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaaga                                                        >  1:26918687/1‑54 (MQ=255)
                         aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:739725/1‑66 (MQ=255)
                         aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg                                            >  1:28854811/1‑66 (MQ=255)
                         aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGcc                                          <  1:42208521/68‑1 (MQ=255)
                         aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGcc                                          <  1:3197199/68‑1 (MQ=255)
                              gcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCt                                         <  1:36001318/64‑1 (MQ=255)
                              gcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCt                                         <  1:49982557/64‑1 (MQ=255)
                              gcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCaa                                     >  1:8404891/1‑68 (MQ=255)
                                 gTAAGTCAGGTATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGc                                  >  1:47513771/1‑68 (MQ=255)
                                  tAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGc                                  <  1:40840333/67‑1 (MQ=255)
                                  tAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGc                                  <  1:25505534/67‑1 (MQ=255)
                                  tAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGc                                  <  1:22332912/67‑1 (MQ=255)
                                      tCAGGCATTATCTACTGCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttct                              >  1:40593517‑M1/1‑29 (MQ=255)
                                      tCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAggg                             >  1:48507846/1‑68 (MQ=255)
                                      tCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAggg                             >  1:54397217/1‑68 (MQ=255)
                                      tCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAggg                             >  1:29185934/1‑68 (MQ=255)
                                       cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAggg                             <  1:20498057/67‑1 (MQ=255)
                                       cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAgg                              <  1:51996783/66‑1 (MQ=255)
                                        aGGCATTATCTACTGCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctact                           >  1:9224871‑M1/1‑27 (MQ=255)
                                           cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                        >  1:19253229/1‑68 (MQ=255)
                                            aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                        >  1:10890342/1‑67 (MQ=255)
                                            aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                        >  1:3396592/1‑67 (MQ=255)
                                                tCTACTGCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcg                   >  1:27500208‑M1/1‑19 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:45515356‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:16555294‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:50436996‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:37673286‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:43878426‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:12088257‑M2/68‑6 (MQ=255)
                                                tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   >  1:25899595‑M2/1‑63 (MQ=255)
                                                 cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAACGCAAGGGAATTAgcgcg                   <  1:34397360‑M2/67‑6 (MQ=255)
                                                 cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:538267‑M2/67‑6 (MQ=255)
                                                 cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                   <  1:51698506‑M2/67‑6 (MQ=255)
                                                  tACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggc                 <  1:23974437‑M2/68‑8 (MQ=255)
                                                  tACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggc                 <  1:11441392‑M2/68‑8 (MQ=255)
                                                   aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggct                >  1:41397438‑M2/1‑60 (MQ=255)
                                                   aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                >  1:47909123/1‑68 (MQ=255)
                                                   aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                >  1:36801785/1‑68 (MQ=255)
                                                   aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                >  1:1615228/1‑68 (MQ=255)
                                                    cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               <  1:17880350/68‑1 (MQ=255)
                                                    cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               <  1:38095814/68‑1 (MQ=255)
                                                    cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               <  1:21539325/68‑1 (MQ=255)
                                                     tGCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcgtctactttcgcgcggctgg              >  1:22801277‑M1/1‑14 (MQ=255)
                                                     tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggc              <  1:10042458/68‑1 (MQ=255)
                                                     tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggc              <  1:15374900/68‑1 (MQ=255)
                                                      gCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgtt             >  1:13665755‑M1/1‑13 (MQ=255)
                                                      gCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgtt             >  1:9061448‑M1/1‑13 (MQ=255)
                                                      gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               >  1:59112/1‑66 (MQ=255)
                                                      gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               >  1:28132403/1‑66 (MQ=255)
                                                      gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               >  1:39546629/1‑66 (MQ=255)
                                                      gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               >  1:44182821/1‑66 (MQ=255)
                                                      gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg               >  1:20066263/1‑66 (MQ=255)
                                                        atcAGCCGCGCGAAAGTAGATGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt            <  1:6548809/65‑1 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc           >  1:11691869‑M2/1‑55 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc           >  1:13092653‑M2/1‑55 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc           >  1:48907810‑M2/1‑55 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt            <  1:16928560/67‑1 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt            <  1:14124812/67‑1 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt            <  1:19737070/67‑1 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt            <  1:1577777/67‑1 (MQ=255)
                                                        aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa           >  1:21990382/1‑68 (MQ=255)
                                                         aCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTa           >  1:7145849/1‑67 (MQ=255)
                                                           aGCCGCGCGAGAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa        >  1:18460009/1‑68 (MQ=255)
                                                           aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa        >  1:10291873/1‑68 (MQ=255)
                                                           aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa        >  1:7899919/1‑68 (MQ=255)
                                                           aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa        >  1:3243436/1‑68 (MQ=255)
                                                            gCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagta       >  1:37170039‑M1/1‑7 (MQ=255)
                                                            gCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt       >  1:35133104/1‑68 (MQ=255)
                                                             ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt       >  1:49575098/1‑67 (MQ=255)
                                                              cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt       <  1:4466549/66‑1 (MQ=255)
                                                              cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATg      >  1:55617132/1‑67 (MQ=255)
                                                              cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga     <  1:51174624‑M1/68‑64 (MQ=255)
                                                              cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga     <  1:31146332‑M1/68‑64 (MQ=255)
                                                              cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtag      <  1:17576727‑M1/67‑63 (MQ=255)
                                                              cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtag      <  1:42759491‑M1/67‑63 (MQ=255)
                                                              cgcgCtaattcccttgcttcgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga     <  1:40170228‑M1/68‑64 (MQ=255)
                                                                 gcgAAAGTAGACGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCgg  <  1:4588637/68‑1 (MQ=255)
                                                                 gcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCgg  <  1:4709184/68‑1 (MQ=255)
                                                                  |                                                                  
ATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGG  >  CP009273/3999897‑4000029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.