| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 350355 = | NA (NA) | 29 (0.050) | 9/92 | NT | 5.3% | noncoding (46/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | 350428 = | 519 (0.900) | noncoding (119/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
Only 100 of 1006 total aligned reads displayed.
GGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCG > CP009273/350288‑350420 | gtaaaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGa > 1:9054099‑M1/67‑68 (MQ=255) gtaaaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGa > 1:53029241‑M1/67‑68 (MQ=255) cGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTg < 1:8434581/66‑1 (MQ=255) gATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt < 1:27131773/67‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:37660648‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:9683904‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:6903696‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:51756723‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:43023265‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:38064509‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:37000287‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:31658443‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:31256620‑M1/6‑1 (MQ=255) aacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCg < 1:2861432‑M1/6‑1 (MQ=255) tcagtgggtaggcctgatatgtcgcgtctgcgtcggatcaggcatctgagcatggtgtcgGATGCGAc > 1:43575652‑M1/61‑68 (MQ=255) agagTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGc < 1:10042978/68‑1 (MQ=255) agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCt > 1:32563557/1‑67 (MQ=255) gggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCGACGc > 1:21049501‑M1/56‑65 (MQ=255) gTAGCTTAGTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCt < 1:36527430/66‑1 (MQ=255) aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAc > 1:17018250/1‑67 (MQ=255) aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAc > 1:40591785/1‑67 (MQ=255) gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAcgcg > 1:21749442/1‑68 (MQ=255) gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAcgcg > 1:44911559/1‑68 (MQ=255) aggcctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCGACGCTGAcgcg > 1:17806997‑M1/52‑68 (MQ=255) ttATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAcgcg < 1:52511844/67‑1 (MQ=255) ttATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGt > 1:53672270/1‑68 (MQ=255) aTTGTCGGATGCGTCGCGCGGTGCATCCGGCCCTGTGTGCCGATGCCTGATGCGACGCTGACGGGtgt > 1:23778310/1‑66 (MQ=38) aTTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGttt > 1:53364603/1‑68 (MQ=255) ctgataagacgcgtcagcgtcgcatcaggcatctgagcatggtgtcgGATGCGACGCGGACgcgtctt > 1:30256372‑M1/48‑65 (MQ=255) tctCGGATGCGTCTCGCGGTGCATCGGGGACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTa < 1:19193350/66‑1 (MQ=25) tGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTa < 1:22332535/68‑1 (MQ=255) gTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTa > 1:27910243/1‑67 (MQ=255) gTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTAt < 1:54242227/68‑1 (MQ=255) tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATc > 1:2417283/1‑68 (MQ=255) tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATc > 1:17347133/1‑68 (MQ=255) tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATc > 1:57826200/1‑68 (MQ=255) tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATc > 1:1859907/1‑68 (MQ=255) gATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACTCGTTTTATCAt > 1:11948645/1‑67 (MQ=255) gATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCAt > 1:10616171/1‑67 (MQ=255) gATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCAt > 1:13936740/1‑67 (MQ=255) aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCGGATGCCTGATGCGACGCTGACGGGTTTTATCATg < 1:50083460/67‑1 (MQ=255) aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATg < 1:39784515/67‑1 (MQ=255) tGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGcc < 1:55501355/68‑1 (MQ=255) tGCGGCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGc < 1:28238378/67‑1 (MQ=255) gcggcgCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt < 1:44038829/68‑1 (MQ=255) gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt > 1:51532477/1‑68 (MQ=255) gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt < 1:8657184/68‑1 (MQ=255) gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt < 1:35874062/68‑1 (MQ=255) gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt < 1:25972914/68‑1 (MQ=255) gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt > 1:47500113/1‑68 (MQ=255) gcgcgGTGGATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGa < 1:24932232/68‑1 (MQ=255) gcgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGa < 1:4796950/68‑1 (MQ=255) gcgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGa < 1:48848233/68‑1 (MQ=255) gcgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGa < 1:26546138/68‑1 (MQ=255) gcgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGa < 1:29078519/68‑1 (MQ=255) gcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGAc < 1:34395418/67‑1 (MQ=255) gCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc < 1:15808238/68‑1 (MQ=255) gCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc < 1:29625590/68‑1 (MQ=255) gCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc < 1:34146251/68‑1 (MQ=255) aTCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAcc < 1:45280606/67‑1 (MQ=255) tCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt > 1:20542241/1‑68 (MQ=255) cGGCACTGTGTGCCGATGCCTGATGCGACGCTGCCGCGTTTTATCATGCCTACGGACCTGAACCGTAg > 1:46921857/1‑68 (MQ=255) cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAg < 1:51201408/68‑1 (MQ=255) cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAg > 1:56155144/1‑68 (MQ=255) cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAg > 1:56506782/1‑68 (MQ=255) ggCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAgg < 1:45894530/68‑1 (MQ=255) ggCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAgg < 1:7587587/68‑1 (MQ=255) ggCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAgg < 1:34895919/68‑1 (MQ=255) ggCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAgg < 1:1152647/68‑1 (MQ=255) cACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTc > 1:41716718/1‑68 (MQ=255) cACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTc > 1:161750/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:55094562/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:57345125/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:12810472/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:26787329/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:3310379/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:49764495/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:15226735/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:41332249/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:42305787/1‑68 (MQ=255) aCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCg > 1:14385924/1‑68 (MQ=255) cTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCgg < 1:39041740/68‑1 (MQ=255) tgtgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGTCTACGGACCTGAACCGTAGGTCGGa < 1:6469031/68‑1 (MQ=255) tgtgtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGa < 1:13354349/68‑1 (MQ=255) gtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATaa > 1:4448581/1‑68 (MQ=255) ccGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc < 1:49422125/51‑1 (MQ=255) atggtgtcgGATGCGACGCTGCCGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc < 1:52176476‑M1/59‑1 (MQ=255) atggtgtcgGATGCGACGCTGACGCGTTTTATCATGCCTACGGCCCTGCACCGTAGGTCGGATAAGgc < 1:56882425‑M1/59‑1 (MQ=255) atggtgtcgGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc < 1:38658019‑M1/59‑1 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:19688048/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:33541144/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:35277725/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:30799896/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:22894488/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:50715438/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:46345968/1‑66 (MQ=255) gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc > 1:54608744/1‑66 (MQ=255) gCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg < 1:6083012/68‑1 (MQ=255) gCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg < 1:25491900/68‑1 (MQ=255) cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcgcg < 1:32153464/68‑1 (MQ=255) | GGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCG > CP009273/350288‑350420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |