| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 350355 = | NA (NA) | 29 (0.050) | 9/92 | NT | 5.3% | noncoding (46/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | 350428 = | 519 (0.900) | noncoding (119/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
Only 100 of 787 total aligned reads displayed.
CGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAC > CP009273/350362‑350495 | tGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGac < 1:20159879/67‑1 (MQ=255) gACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGacac < 1:30403292/68‑1 (MQ=255) gACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGacac < 1:55771134/68‑1 (MQ=255) gACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGacac < 1:31928656/68‑1 (MQ=255) cgcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCa > 1:38120214/1‑68 (MQ=255) cgcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCa < 1:13917268/68‑1 (MQ=255) gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAt < 1:464896/68‑1 (MQ=255) gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAt < 1:49439815/68‑1 (MQ=255) gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAt < 1:32774168/68‑1 (MQ=255) gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAt < 1:35867722/68‑1 (MQ=255) gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAt < 1:49682623/68‑1 (MQ=255) gccttatccgacctacggttcaggtccgtaggcatgataaaacgcgtcagcgtcgcatcCGACACCAt < 1:19039831‑M2/9‑1 (MQ=255) gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATg < 1:43996331/67‑1 (MQ=255) gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc < 1:10128082/68‑1 (MQ=255) gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc < 1:39035056/68‑1 (MQ=255) tttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTc < 1:7934652/68‑1 (MQ=255) ttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCa < 1:30976731/68‑1 (MQ=255) ttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCa < 1:41388313/68‑1 (MQ=255) ccgacctacggttcaggtccgtaggcatgataaaacgcgtcagcgtcgcatcCGACACCATGCTCAGa < 1:42479051‑M2/16‑1 (MQ=255) ccgacctacggttcaggtccgtaggcatgataaaacgcgtcagcgtcgcatcCGACACCATGCTCAGa > 1:8998621‑M2/53‑68 (MQ=255) aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa < 1:44678259/68‑1 (MQ=255) aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa < 1:4578098/68‑1 (MQ=255) tCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGAt > 1:9697211/1‑68 (MQ=255) cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGAt > 1:2337525/1‑67 (MQ=255) cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATg < 1:51669307/68‑1 (MQ=255) aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGc < 1:46985752/68‑1 (MQ=255) tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGcc < 1:51274944/68‑1 (MQ=255) gCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATg > 1:35345243/1‑65 (MQ=255) ccTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTg > 1:12978339/1‑68 (MQ=255) aCCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCa < 1:40712085/53‑1 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACCCCATGCTCTGATGCCTGATGCGAc > 1:43457781/1‑67 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc < 1:57674993/67‑1 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc < 1:19626315/67‑1 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc > 1:36188573/1‑67 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg < 1:23651000/68‑1 (MQ=255) ccTGAACCGTAGGTCGGATAAGGCGCGCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg < 1:48364601/68‑1 (MQ=255) gAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTg < 1:26890664/68‑1 (MQ=255) aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc > 1:29408730/1‑68 (MQ=255) aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc > 1:17937619/1‑68 (MQ=255) aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc > 1:6884864/1‑68 (MQ=255) aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc > 1:33559012/1‑68 (MQ=255) aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc > 1:49042224/1‑68 (MQ=255) ccGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg < 1:29747976/68‑1 (MQ=255) cGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgc > 1:38490588/1‑68 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:55110010/68‑1 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:32274144/68‑1 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:28653295/68‑1 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:27747917/68‑1 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:14980131/68‑1 (MQ=255) gTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:45200092/68‑1 (MQ=255) gTAGGGCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg < 1:3430687/68‑1 (MQ=255) aGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg > 1:5048923/1‑66 (MQ=255) tCGGATAAGGCGCTCGCGTCGCATCCGCCACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTa > 1:27206704/1‑68 (MQ=255) tCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt < 1:16068094/67‑1 (MQ=255) tCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt < 1:14384203/67‑1 (MQ=255) cGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTa < 1:731586/67‑1 (MQ=255) cGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTa < 1:11710669/67‑1 (MQ=255) cGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTa < 1:45974049/67‑1 (MQ=255) cGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGACTTa < 1:39613108/67‑1 (MQ=255) aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAg > 1:17066920/1‑68 (MQ=255) tAAGGCGCTCGCGTCGCATCCGACACTATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAgg < 1:4322726/68‑1 (MQ=255) tAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAgg < 1:5873517/68‑1 (MQ=255) tAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAgg < 1:25075876/68‑1 (MQ=255) tAAGGCGCTCGCGTCGCATCCGACACCATGCTAAGAAGCCTGATGCGACGCTGACGCGTCTTATCAgg < 1:13432842/68‑1 (MQ=255) acgcgtcagcgtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGCCGCGTCTTATCGGGcc > 1:8456057‑M2/19‑68 (MQ=255) ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt > 1:41882491/1‑68 (MQ=255) ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt > 1:26363864/1‑68 (MQ=255) cgcgtcagcgtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAggcat > 1:57009673‑M2/18‑66 (MQ=255) gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt > 1:57385816/1‑67 (MQ=255) gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt > 1:22053900/1‑67 (MQ=255) gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCGGACGCGTCTTATCTGGCCt > 1:12183981/1‑67 (MQ=255) cgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa > 1:44349317/1‑67 (MQ=255) cgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa > 1:56444533/1‑67 (MQ=255) cgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa > 1:11403086/1‑67 (MQ=255) gcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc < 1:316269/67‑1 (MQ=255) cgtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc > 1:53887048‑M2/10‑64 (MQ=255) cgtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc > 1:22715119‑M2/10‑64 (MQ=255) gtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTg < 1:52964687‑M2/59‑1 (MQ=255) gtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTg < 1:37583595‑M2/59‑1 (MQ=255) gtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTg < 1:18382862‑M2/59‑1 (MQ=255) gtcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTg < 1:33101726‑M2/59‑1 (MQ=255) ggcgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTg < 1:17364390‑M2/59‑1 (MQ=255) cgcatcCGACACCATGCTGAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:24274876‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:30070657‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:10443676‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:16595361‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:21461812‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:623508‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:25573389‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:26073680‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:4996851‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:40393648‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:54334541‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:43023265‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:53142209‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:47770166‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:52341146‑M2/61‑1 (MQ=255) cgcatcCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt < 1:51975019‑M2/61‑1 (MQ=255) cCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTac > 1:37095296‑M2/2‑67 (MQ=255) cGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac < 1:20684795/68‑1 (MQ=255) | CGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAC > CP009273/350362‑350495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |