| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 580 (0.830) | 4616 (6.720) | 34/110 | NT | 87.2% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 784 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 6312 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA > CP009273/360029‑360163 | ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc > 1:28495132‑M1/42‑68 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:54827918‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:13573947‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:10513550‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:23565142‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:7677971‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:42179657/68‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGttt > 1:10002661/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:12068929/1‑68 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:41664976/67‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:18349610/68‑1 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:23030384‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:24024386‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:40635245‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:15795983‑M1/2‑28 (MQ=255) gatAAGCTGTCAAACATGAGAATTCGaaccgcttctccttgagaattattttttcgcgggtgaaacg > 1:53653070‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:34338673‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:47231759‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:46817755‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:52022917‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:48354859‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:24547074‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:31554244‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:7172394‑M1/1‑26 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:39575572‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:13089737‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:48810107‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:39159641‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac < 1:22525614‑M1/67‑44 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:30196039‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:17724715‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:56990603‑M1/1‑24 (MQ=255) caGCTGTAAAACTTGAGAATTCCTATCCCCAATTCCTGGCCGTTTCGGGCGGGCGGCCTGCCCGCCAc < 1:3220611/67‑1 (MQ=21) aGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcc < 1:45614369‑M1/68‑47 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagagttattttttcgcgggtgaaacgact > 1:25103830‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattcttttttcgcgggtgaaacgact > 1:54229563‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:49262903‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:40106938‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:8819927‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:1155134‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:12664751‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:41208625‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:8324041‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:37121381‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:16630592‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:28075855‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:44150102‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:32768802‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:21043643‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:22033306‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:44720809‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:47732765‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:26606854‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:28906728‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaaatattttatcgcgggtgaaacgact > 1:27126483‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctcctggagaattattttttcgcggctgaaacgact > 1:35482392‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:34914039/1‑66 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:43691868‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:36076911‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:14161178‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:19459160‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:31118684‑M1/68‑50 (MQ=255) cAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggttt > 1:51505042‑M1/1‑16 (MQ=255) cAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtt < 1:50395373‑M1/67‑52 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:53084423‑M1/1‑14 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:6743429‑M1/1‑14 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:25499073‑M1/68‑55 (MQ=255) aaatgATAATTCCatccgcttctccttgagaattattttttcgcgggttaaacgactcctggtttgta < 1:33819328‑M1/66‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:10984880‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:2595974‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:5594396‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:29564476‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:58062181‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:43237238‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:5106050‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgagggtgaaacgactcctggtttgta < 1:46276455‑M1/68‑56 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:6226958‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:37679775‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttatccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:20561926‑M1/1‑11 (MQ=255) tGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaa > 1:15256104‑M1/1‑10 (MQ=255) gagaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt > 1:18973350/1‑67 (MQ=255) agaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaa > 1:932978‑M1/1‑8 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGtt > 1:45170126/1‑66 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:1999615‑M1/67‑61 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:55365543/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:16235689/67‑1 (MQ=255) aaTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcc > 1:33232388‑M1/1‑6 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca > 1:49864413‑M1/1‑5 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca > 1:27599921‑M1/1‑5 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca > 1:42649244‑M1/1‑5 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcc < 1:38245412‑M1/67‑63 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaacgccagc > 1:52499487‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:38635951‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:36566882‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:14759403‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:3057608‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:57520485‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:17255646‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:21486859‑M1/1‑3 (MQ=255) catccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagcag < 1:56454910‑M1/68‑68 (MQ=255) | GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA > CP009273/360029‑360163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |