| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 580 (0.830) | 4616 (6.720) | 34/110 | NT | 87.2% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 784 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 6093 total aligned reads displayed.
TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 | ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAAGCAAATACTGTTTCATCCGCTTCTCCATgaga > 1:16226688/1‑68 (MQ=255) cGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAat > 1:41690101/1‑68 (MQ=255) cagtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa < 1:49560872‑M2/38‑1 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:12238586‑M2/29‑68 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:23870652‑M2/29‑68 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:10005888‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:32731421‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:38146708‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:24974061‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:22903286‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:51337108‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:52385262‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:21380379‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:53530631‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:57369168‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:17721823‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:7670483‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:666291‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:1471882‑M2/42‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:48099851‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:30464654‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:7101933‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:35945595‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:3646885‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:54026147‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:33758733‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:50800921‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:11621228‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:27537810‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:4905723‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:37093005‑M2/44‑1 (MQ=255) taagctgacaaacatgagaaatccATCCGCTTCTCCTTGAGAATTATTTTTTCGCCGGTGAAACGAc > 1:5681267‑M2/25‑67 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:13608012/68‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:15780729/68‑1 (MQ=255) aagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:40109292‑M2/24‑67 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:12732837/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:4463907/1‑66 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGCCt > 1:45517902‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGActcat > 1:3908816‑M2/22‑66 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:10469471‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:48641641‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:34796029‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:8839391‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:41211780‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:8351679‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:52952169‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:55068381‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:57872355‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:31510994‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:24449332‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:19893837‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:29967806‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:18907809‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:28866201‑M2/22‑65 (MQ=255) gctgtcaaacatgagaataccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:2538829‑M2/22‑65 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:20937164‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:11022737‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:32129885‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:14210466‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:22395033‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:15234312‑M2/49‑1 (MQ=255) caaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGttt > 1:47019635‑M2/17‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCttgtttgt < 1:46670838‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:18334703‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:5460670‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:2342018‑M2/15‑68 (MQ=255) tcatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:39530048‑M2/55‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:55660009‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:38614165‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:28441807‑M2/55‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:29493056‑M2/55‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:3427419‑M2/55‑1 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:9351918‑M2/12‑68 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:16661938‑M2/12‑68 (MQ=255) tgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa < 1:47533599‑M2/58‑1 (MQ=255) tgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa < 1:13142146‑M2/58‑1 (MQ=255) agaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:17286597‑M2/9‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:21929661/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:26527827/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:28010770/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:43693263/1‑67 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:4509819‑M2/60‑1 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:5623610‑M2/60‑1 (MQ=255) aattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc > 1:33232388‑M2/7‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAgccc > 1:40635119‑M2/6‑67 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc < 1:37632073‑M2/62‑1 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:25911196‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:6073056‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:42649244‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATAATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:50142741‑M2/6‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:4413011‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:20437603‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:4215490‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:46064204‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:31083165‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:51870691‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc < 1:35357025‑M2/65‑1 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:19363280/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:43229417/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:27039858/1‑68 (MQ=255) | TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |