| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 442683 | 593 (0.850) | 75 (0.130) | 15/90 | NT | 11.0% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 738 (1.310) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
Only 100 of 1273 total aligned reads displayed.
AATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAA > CP009273/442616‑442749 | tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc > 1:39184403‑M1/58‑68 (MQ=255)tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc > 1:3552330‑M1/58‑68 (MQ=255) aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:35007493/68‑1 (MQ=255) aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:36565343/68‑1 (MQ=255) aTGGCGATGGCATAGGAGTGAGGCATCCGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:57219410/68‑1 (MQ=255) ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTAt < 1:26159949/68‑1 (MQ=255) cctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGctgcgccgcagg < 1:42222599‑M1/14‑4 (MQ=255) aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc < 1:36207940/68‑1 (MQ=255) aGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCg < 1:31907289/68‑1 (MQ=255) aGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCg < 1:53091498/68‑1 (MQ=255) gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt > 1:55730796/1‑68 (MQ=255) aGTGCGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:12110102/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg < 1:26519002/66‑1 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg < 1:47910548/66‑1 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:45005462/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:27689389/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:37091414/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:33032086/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:19286245/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:8294232/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:12919179/1‑68 (MQ=255) gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt < 1:21412946/67‑1 (MQ=255) gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt < 1:16781316/67‑1 (MQ=255) gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt < 1:46553834/67‑1 (MQ=255) gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc < 1:47054408/68‑1 (MQ=255) gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc < 1:29197453/68‑1 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:34125418/1‑68 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:16319517/1‑68 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:28039157/1‑68 (MQ=255) gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:7078781/1‑67 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca < 1:15720736/67‑1 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc < 1:9122617/66‑1 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc < 1:2246964/66‑1 (MQ=255) aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca > 1:25596217/1‑68 (MQ=255) aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca < 1:7709681/68‑1 (MQ=255) aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca > 1:40233424/1‑68 (MQ=255) aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcac < 1:15941028/67‑1 (MQ=255) cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt > 1:44104745/1‑68 (MQ=255) tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt < 1:13866952/67‑1 (MQ=255) tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa < 1:30408704/68‑1 (MQ=255) gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctacggtgcggtaaccggt > 1:50723948‑M1/1‑39 (MQ=255) cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc > 1:46078075/1‑68 (MQ=255) cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGc < 1:10627518/67‑1 (MQ=255) cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGc < 1:20734213/67‑1 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg < 1:26845931‑M1/43‑1 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg < 1:22709935‑M1/43‑1 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg < 1:23421751‑M1/43‑1 (MQ=255) acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgag > 1:23868750‑M1/1‑36 (MQ=255) aGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctgctgtgcggtatccggtgagt > 1:37575231‑M1/1‑34 (MQ=255) gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc > 1:11001328/1‑67 (MQ=255) cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGAt < 1:10079514/65‑1 (MQ=255) cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa > 1:18258324/1‑67 (MQ=255) aGATAGCCAGCAGGATCGCTGCGCCGCcggggatcggcgacggtgcggtaaccggtgagttcgatagc > 1:17749125‑M1/1‑27 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:51373945‑M2/68‑4 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:48653000‑M2/68‑4 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:3221344‑M2/68‑4 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGAcggtgatcggctactgtcccgtcaccggggagttcgattgcg > 1:28819314‑M1/1‑26 (MQ=255) ggttcgctctccggCGCTGCGCCGCTCTCGAACTCCCCGGTTACCGCACAGTAGCCGATCACcggcg < 1:24483648‑M1/53‑1 (MQ=255) tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc > 1:31028305‑M2/1‑63 (MQ=255) gCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgc > 1:18626427‑M1/1‑22 (MQ=255) gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc < 1:15316163‑M2/68‑8 (MQ=255) ccAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca < 1:9530114‑M2/68‑9 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTCGCCGATCACCGgcggcgcagc > 1:53662025‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:30178352‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:21930105‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:12601327‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:52607317‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:8658789/67‑1 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:29918543/67‑1 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc > 1:21087650/1‑68 (MQ=255) aTCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgat > 1:6541633‑M1/1‑13 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc < 1:54770910/65‑1 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga > 1:13309984/1‑68 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:24936415‑M1/68‑1 (MQ=255) gCTGCGCCGCcggtgatcggctagtgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:33426177‑M1/1‑10 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:41103320‑M1/1‑10 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:39764870‑M1/1‑10 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:34790879‑M1/1‑10 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCGGgaga < 1:19942646‑M1/67‑1 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:45574652‑M1/67‑1 (MQ=255) GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga < 1:56399771‑M1/67‑1 (MQ=255) tGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctg > 1:43419266‑M1/1‑8 (MQ=255) tGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctg > 1:40572617‑M2/1‑47 (MQ=255) gcgcCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggc < 1:49965434‑M1/68‑62 (MQ=255) gcgcCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggc < 1:52112975‑M1/68‑62 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCCCAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:4146088‑M2/1‑46 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:55141839‑M2/1‑46 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGTGAGCGa > 1:56191301‑M1/1‑68 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:42933380‑M1/1‑68 (MQ=255) gccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggcta < 1:54095036‑M1/68‑64 (MQ=255) gccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcatgcaggcta > 1:14608731‑M1/1‑5 (MQ=255) GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa < 1:57461465‑M1/67‑1 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:48374477‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:11719974‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtccggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:49348574‑M1/68‑66 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:5841624‑M2/1‑42 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:14196708‑M1/1‑67 (MQ=255) CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAAcc > 1:44414112‑M1/1‑67 (MQ=255) gccggtgatcggctactgtgcggtaaccgttgagttcgatagcggcgcagcgatcctgctggctatct < 1:38512423‑M1/68‑67 (MQ=255) gccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatct < 1:34552507‑M1/68‑67 (MQ=255) | AATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAA > CP009273/442616‑442749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |