| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 41 (0.070) | 12/96 | NT | 98.0% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 617 total aligned reads displayed.
GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 | gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:30038620/1‑67 (MQ=31)gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:30343305/1‑67 (MQ=31) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcg < 1:10120749/68‑1 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:9491230/1‑67 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:5316611/1‑67 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:3295522/1‑67 (MQ=35) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:42215005/1‑67 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:39093861/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:28393286/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:29255048/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:33474193/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:43631078/68‑1 (MQ=35) gaGGCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:51099947/68‑1 (MQ=25) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:10358523/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:37957377/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:33898244/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:40258707/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:43223715/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:32081783/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:47580761/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:52766194/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:2704183/1‑68 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:38765544/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:39318247/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:13239262/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:56229595/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:2808187/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:45618809/68‑1 (MQ=35) aTCGAGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:24843599/68‑1 (MQ=25) tCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatt > 1:6180053/1‑68 (MQ=35) gTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttattta > 1:19836521/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:21215025/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:36761919/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:44862614/1‑68 (MQ=35) tGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttatttat > 1:50161550/1‑68 (MQ=35) ggCATCTAGTTTAAGATCATCGGGGTAACACGGTTTATGACGTTGCTTCCGGCAACGCGTtatttatt < 1:13605988/68‑1 (MQ=11) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:5953656/1‑66 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:15731917/1‑66 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:23837554/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:22050704/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTatttatttat > 1:4423868/1‑66 (MQ=25) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:54325780/67‑1 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:397814/1‑67 (MQ=35) cGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAAc < 1:36036949/68‑1 (MQ=35) aaGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:14448136/68‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:9102839/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:10597776/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:16608962/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:27660626/67‑1 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:24367905/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:57661465/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:41808624/1‑68 (MQ=35) atcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCg > 1:22462406/1‑68 (MQ=35) tcatcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGt > 1:18564435/1‑68 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:38344547/1‑67 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:41378783/1‑67 (MQ=35) tcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTAc < 1:30827271/68‑1 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:21626925/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:13933260/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCAGAACTCGGTCCGTTACCg < 1:31299729/68‑1 (MQ=25) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:42638961/1‑68 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:31692677/1‑68 (MQ=35) aaaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaa < 1:37731155/67‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:19018426/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:11662782/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:6864249/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:45224996/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:8896584/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGGTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:10892002/68‑1 (MQ=25) aCGGTTTATGAGGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:25580296/1‑68 (MQ=25) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:53389277/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:8520199/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:28687888/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:53918845/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:34701278/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:12142818/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:25950442/1‑68 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:7451066/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:52343950/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:57083287/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:54661330/68‑1 (MQ=35) tttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:51765855/1‑66 (MQ=35) tttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:18191409/1‑66 (MQ=35) aTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:23034950/68‑1 (MQ=35) aTGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTgg < 1:35781547/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt > 1:46224226/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:12753599/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:15344096/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:20821155/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:55605660/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:49470798/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:48948961/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:48382987/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:48011549/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:4716900/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:2654800/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:20117797/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:14921507/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:16973546/1‑68 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:17571981/1‑67 (MQ=35) | GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC > CP009273/1426848‑1426971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |