| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 41 (0.070) | 12/96 | NT | 98.0% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 280 total aligned reads displayed.
ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 | ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:42792119‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:55498456‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:23328483‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:18770126‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:53545985‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:29894266‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:45775275‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:32711720‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:1487597‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:687429‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:34293018‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:35626955‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:401145‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:8150201‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgtggaagatcatcggggtaaaacggtttatgacgtggc < 1:2641261‑M2/1‑1 (MQ=255)ttcaacagtgatgaatcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:8651680‑M2/1‑1 (MQ=255)ctcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:7477458‑M2/1‑1 (MQ=255) tcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCt < 1:387520‑M2/2‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaatatcatcggggtaaaacggtttatgacgtggCTTcc > 1:21800373‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28583046‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:15229173‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:13253206‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:5833190‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:34965262‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:35281597‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:31775734‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:31480475‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:31225551‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:4675183‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:48008954‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:12450647‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:50784161‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:2810545‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:21971086‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:2390714‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:25074223‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:39590603‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:52735801‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcagggtaaatccgtttatgccgtggCTTcc > 1:20488088‑M2/64‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:37848171‑M2/63‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:17319624‑M2/63‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:19759572‑M2/63‑68 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTtccc > 1:51339375‑M2/62‑66 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:42267801‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:7985205‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:42037899‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:55810825‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:40791241‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:9816918‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:4303068‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:43463932‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:45210940‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:45392424‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:57919287‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:47535953‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:48869709‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:49267140‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:57559810‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:5636020‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:54664465‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:31200356‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:25729528‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:27877345‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:25151695‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:23475170‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:20682670‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:29063641‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:29430728‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:30368168‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:30611324‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:32027062‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16284190‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:33371408‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:3616532‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:1413960‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:37338495‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:11626229‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggttaatgacgtggCTTCCg > 1:44475152‑M2/62‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:33939717‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:37012074‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCgg < 1:2691997‑M2/7‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGc < 1:37990307‑M2/8‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:12906982‑M2/59‑67 (MQ=255) acacAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTaa < 1:55844775/65‑1 (MQ=1) gatcatcggggtaaaacggtttttgacgtggCGTCCGGCGATAACCAGGTTAGATTTTACGGGAACg > 1:1351470‑M2/32‑67 (MQ=255) cggggtaaaacggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAg > 1:11906874‑M2/26‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATACGCAGGTTACATTTTCCGGTAACGGGCCGAGTTGAGcaat > 1:28347484‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:28799718‑M2/17‑68 (MQ=255) ggtttatgacgtggCTTCCGGCGATACCCAGGTAACATTTTCCGGTAACGGACCGAGTTcagaaagat > 1:57122084‑M2/15‑65 (MQ=255) atgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAc > 1:32659782‑M2/10‑68 (MQ=255) gacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGATATAAATAAcgc > 1:10349729‑M2/8‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGGCCGAGTTCAGAAATAAATAAcgcg > 1:17840790‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:39502929‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTGCAGAAATAAATAAcgcg > 1:9083404‑M2/7‑68 (MQ=255) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:15703484/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:20809877/68‑1 (MQ=33) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGTCCGAGTTCAGAAATAAATAACGCGTCGcc < 1:6437134/68‑1 (MQ=25) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:18398307/68‑1 (MQ=35) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:50325326/68‑1 (MQ=35) CTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCg > 1:367130‑M2/1‑68 (MQ=255) | ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |