| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 518 (0.740) | 27 (0.050) | 7/94 | NT | 5.8% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 446 (0.760) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 807 total aligned reads displayed.
AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 | aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:21171423/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:37320780/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:14590798/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:47190675/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:52849198/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:39148048/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:48834550/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:12012653/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:10983960/1‑67 (MQ=255) aCGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgcc > 1:11678541/1‑68 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:45475642‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:56980103‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:7859281‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:4258015‑M1/4‑1 (MQ=255) cGGCATAATGCGCGGTAGCTCACAACCTGAATAAAATTACTCAGGGGCGAAGTTGTGCCTGCAAgcc > 1:24501795/1‑67 (MQ=255) ggCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgccgc < 1:13060531/68‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:16591704‑M1/7‑1 (MQ=255) ggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:4929416‑M1/9‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCCGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:31746410/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGccgccg < 1:52335619/67‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:2413789/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:25355274/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:39630016/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:27820125/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:31371931/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:44083691/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:41944399/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:57252674/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:5651958/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:5530984/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:20037081/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:51490617/68‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:32965214‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:6962170‑M1/9‑1 (MQ=255) aaTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCt < 1:38154335/68‑1 (MQ=255) gcgcGGTAGCTCACCACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:57698835/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:36792146/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:2353125/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:6068121/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:3228444/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGACGTCTATg > 1:47623568/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATAATCTCAGGGGCGAAGGTGTGCCAGCAAGCCGCCGTCTaag > 1:25953332/1‑66 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:26597179/67‑1 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:35459768/67‑1 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGt > 1:41176715/1‑68 (MQ=255) gcgGTAGCACACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATCGt > 1:19543867/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:8638133/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:28428123/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:5076025/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:55988758/1‑68 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaaa < 1:51914105/67‑1 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAAc > 1:40722952/1‑68 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg < 1:18114378/68‑1 (MQ=255) cacaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAgg < 1:45083456/68‑1 (MQ=255) cacaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAgg < 1:49762676/68‑1 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:35113691/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga < 1:26363721/68‑1 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATCGTTAAACAACgagct > 1:9274366/1‑66 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGATGGTGTGCCTGCAAGCCGCCGTCTATGGTTAATCAAGGAGata > 1:36000288/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:13732503/1‑68 (MQ=255) aaTAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAtttt > 1:33473863/1‑68 (MQ=255) aTTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACa < 1:51634822/51‑1 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:10070610/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:14123607/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:15862974/1‑68 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:12690078‑M1/40‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGGTAAACAAGGAGATATTTTTacggc < 1:48288423‑M1/40‑1 (MQ=255) ctcAGGGGCGAAGGTGTGCCTGCAAGCCGACGTCTATGGTTAAACAAGGAGATATTTTTacggaacg > 1:34341097/1‑67 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:15379963/1‑68 (MQ=255) cAGGGGCGACGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:1488489/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:46773148/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:28062975/68‑1 (MQ=255) tcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:4458189‑M1/46‑1 (MQ=255) ggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg > 1:5506611/1‑68 (MQ=255) cGAAGGCGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:45739042/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:6622423/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:17809161/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:50484097/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:40257663/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:2086228/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:29170559/67‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:10608559/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:23158578/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:18741065/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGTTTAAACAAGGAGATATTTTTACGGCACGGCGTCTGAACaat < 1:20214786/66‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta > 1:54764392/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta > 1:2728016/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta > 1:8163320/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:53357689/66‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACTGCACGGCGGCTGAAGaattaa < 1:33825257/68‑1 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:30943464/1‑68 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaat < 1:38649515/67‑1 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:43314078/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:46223933/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:37735118/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:21759124/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:17098532/68‑1 (MQ=255) aaGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc < 1:29982519/67‑1 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATGTTTTTACGGCACGGCGGCTGAACGATTAATTACGACAg < 1:53993775‑M1/68‑1 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAg < 1:22702421‑M1/68‑1 (MQ=255) | AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |