| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 518 (0.740) | 27 (0.050) | 7/94 | NT | 5.8% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 446 (0.760) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 766 total aligned reads displayed.
GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505813‑1505947 | ggCGAAGGTGTGCCTGCAAGCCGCTGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg > 1:53996043/1‑68 (MQ=255)ggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg > 1:3571992/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa > 1:43314685/1‑68 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATCGCAACACAAGGAGATATTTTTACGCCACGGCGGCTGAACa < 1:54381407/67‑1 (MQ=255) aGGGGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:21873832/67‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:3479464/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:49183358/1‑68 (MQ=255) gcgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:8351138/3‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta > 1:55068924/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt < 1:38126577/67‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt < 1:28121034/67‑1 (MQ=255) taattgttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACaattaa < 1:17582458‑M2/10‑1 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:16657013/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:13619820/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:14868425/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:17287775/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:4970507/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:39113831/68‑1 (MQ=255) tcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc < 1:57869076‑M1/66‑1 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:27112467/1‑68 (MQ=255) GCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAgg < 1:11889057‑M1/68‑1 (MQ=255) GCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAgg < 1:15749952‑M1/68‑1 (MQ=255) CCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa < 1:50814615‑M1/68‑1 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:7372460‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:24922433‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:27422500‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:36863323‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:32985640‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:42109302‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:42697208‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:44494188‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:19747894‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:18850267‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:46607675‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:11657700‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:51968195‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:40627126‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:31835346‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:38515383‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:52433691‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:12836855‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:6598935‑M1/1‑68 (MQ=255) GCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGt < 1:16185277‑M1/68‑1 (MQ=255) gGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:32545785‑M1/2‑65 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:50588441/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:30235441/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:22174168/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:57212135/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAc < 1:5675159/68‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:1082567/68‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:49912586/68‑1 (MQ=255) aTGGTTAAACAAGTAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:45730819/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:22916706/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:40475347/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:31387119/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:33496803/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:29646487/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:26179069/68‑1 (MQ=255) ggTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTa > 1:8825096/1‑68 (MQ=255) ggTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTa < 1:14306085/68‑1 (MQ=255) ggTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTa < 1:3542722/68‑1 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:1859215/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:53229581/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:50269122/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:34062020/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:7934004/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:47372936/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:21326239/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:4414791/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:55906747/1‑68 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:5538219/68‑1 (MQ=255) aaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGc > 1:23657168/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:20429924/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa < 1:35000938/68‑1 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:12405751/1‑68 (MQ=255) aaGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAg < 1:41089015/68‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:3101912/66‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:28900040/66‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:40085498/66‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACa < 1:942110/67‑1 (MQ=255) tttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc > 1:7108840/1‑67 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc < 1:19974120/68‑1 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc < 1:5920069/68‑1 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcag < 1:36207552/68‑1 (MQ=255) cggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagc > 1:53743411/1‑68 (MQ=255) cggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagc > 1:45302555/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca < 1:10457256/68‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:10139085‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:14035524‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:54896150‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:44970649‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:18148822‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGcc < 1:29260843‑M2/59‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGcc < 1:4863762‑M2/59‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:48134692‑M2/61‑1 (MQ=255) cgcggcTAAAAAATAATTAACGCCAGGATAAAGACCTATTGAGAAACAAATTTGCCCGCAGCAGCCtg < 1:37532053/67‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:24242184‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:26536227‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:51676851‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:51326737‑M2/63‑1 (MQ=255) | GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505813‑1505947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |