| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1546399 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (72/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1546424 | NA (NA) | noncoding (97/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 429 total aligned reads displayed.
ATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAG > CP009273/1546351‑1546465 | aTCCGGGATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA > 1:52246165‑M2/1‑68 (MQ=255)aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA > 1:570001‑M2/1‑68 (MQ=255)aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA > 1:35526358‑M2/1‑68 (MQ=255)aTCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA > 1:14425038‑M2/1‑68 (MQ=255) tCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA < 1:48728484‑M2/67‑1 (MQ=255) tCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA < 1:40617403‑M2/67‑1 (MQ=255) tCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCA < 1:34323752‑M2/67‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCTAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:48042327‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:1024061‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:4372850‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:32583626‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:29927714‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:21688729‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATC < 1:12435754‑M2/68‑1 (MQ=255) ccGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGAGTAGCGCATC < 1:57612945‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:56232294‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:33408413‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:12921673‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:14009896‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:2638521‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:22471619‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA < 1:46878507‑M2/68‑1 (MQ=255) cGGCATGAAAACCCTTCAAATCCAATAGAATGCAGAGAACGAGTAGGACTGATAAGCGTAGCGCATCA < 1:45991135‑M2/68‑1 (MQ=255) gtaatgaAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:31047270‑M2/4‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:17887635‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:13625821‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:32139368‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:37997168‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:12055023‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:38284934‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:54482324‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:49151653‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:12155026‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:26078054‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:2578723‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:23771430‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:7333121‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:19344283‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:57838961‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:43345157‑M2/1‑68 (MQ=255) ggCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAG > 1:669777‑M2/1‑68 (MQ=255) cATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCTTAGCGCATCAGGC < 1:4003695‑M2/68‑1 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTTCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:24776352‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:31356597‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:43054385‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:33706371‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:15257209‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:7607858‑M2/1‑67 (MQ=255) aaTCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCctacacgttcactgc > 1:41498030‑M2/1‑53 (MQ=255) aGATTGCAGTGGACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:35859005/1‑68 (MQ=14) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:34080502/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:16402133/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:30516626/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:28770615/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:28270078/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:45187673/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:53578052/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:35344534/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:7047098/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:14822688/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt < 1:21419886/68‑1 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTATCTCATCAGttt > 1:9028716/1‑68 (MQ=255) gATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttta > 1:1088073/1‑67 (MQ=14) ttGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTGTTGCGTTTGTCATCAGTTTCa < 1:27022945/67‑1 (MQ=25) ttGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa < 1:44748032/68‑1 (MQ=37) ttGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa < 1:52611448/68‑1 (MQ=37) ttGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaa < 1:52946423/68‑1 (MQ=37) gCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAAt > 1:3317912/1‑68 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:49533666/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:9623523/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg > 1:42725484/1‑67 (MQ=40) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATg > 1:50197631/1‑67 (MQ=25) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATg > 1:55346679/1‑67 (MQ=25) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATg > 1:27555798/1‑67 (MQ=25) aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATg > 1:20894201/1‑67 (MQ=25) gTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGgc > 1:49915589/1‑68 (MQ=25) gAACGTGTAGGCCTGATACGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:8888916/66‑1 (MQ=255) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:11259528/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:44355086/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:37444774/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc < 1:20452314/66‑1 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:13227191/1‑66 (MQ=40) gAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGgc > 1:47562469/1‑66 (MQ=25) aCGTGTAGGCCTGATAAGCGTAGCGCCTCAGGCTATGTTGCGTTTGACATCAGTTTCAAATGgcgagg > 1:22038733/1‑65 (MQ=14) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:42268094/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:55711135/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:24115389/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCt < 1:51507912/67‑1 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCt < 1:1004258/67‑1 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:7787213/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:22868745/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:36993439/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:17039687/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:8466483/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt > 1:16118175/1‑68 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:54162419/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:45684720/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGt > 1:6125029/1‑68 (MQ=255) gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTa < 1:18837933/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTaaaa > 1:17326708/1‑68 (MQ=255) | ATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAG > CP009273/1546351‑1546465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |