| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1546399 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (72/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1546424 | NA (NA) | noncoding (97/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 1160 total aligned reads displayed.
CATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACG > CP009273/1546357‑1546491 | aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:8948032‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:57668930‑M2/1‑67 (MQ=255) aTGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:43127468‑M2/1‑67 (MQ=255) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt > 1:4914684/1‑68 (MQ=31) aGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATG‑‑GAGTTTGTCATCAGTTTCa > 1:7620094/1‑68 (MQ=11) gATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:13155503‑M2/1‑44 (MQ=255) ttGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTaaa > 1:55570190/1‑68 (MQ=14) gAACGTGTAGGCCTGATACGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgcgc < 1:1922869/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:42268094/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc > 1:52988189/1‑64 (MQ=40) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:22868745/68‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg < 1:25906026/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:24228955/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:33393657/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:54162419/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:4289100/68‑1 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:50103109/68‑1 (MQ=255) gtgtAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTa < 1:18837933/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTaaaa > 1:53803038/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGc > 1:2981084/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGc > 1:10028461/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGc > 1:29213171/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:38860269/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:57128687/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:45024119/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:30272461/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCg > 1:19903675/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCg > 1:170832/1‑68 (MQ=255) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAACGGCGGCa < 1:38328244/68‑1 (MQ=255) gATAAGCGAAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCa < 1:14665933/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:20729374/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:16805546/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:6548172/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:20958866/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt < 1:49421563/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt > 1:22281838/1‑68 (MQ=255) aGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt < 1:31682274/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:13619241/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat < 1:27755494/68‑1 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:41182306/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:2164776/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCat > 1:35604523/1‑68 (MQ=255) gTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTAAAATGGCGCTGTAAAAGGCGTCATTTTAat > 1:46216014/1‑68 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTTTAATGAGTTTCATATGGCGATGTAAAAGGCGTCATTTTCatat < 1:45295385/68‑1 (MQ=25) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:9688489/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:40687935/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:47471076/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:25284787/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:27404617/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:3119485/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCatat < 1:28765614/68‑1 (MQ=255) aGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCGGTAAAAGGCGTCATTTTCatat < 1:35171042/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:14183628/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:7124500/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt > 1:44422146/1‑68 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:30715348/68‑1 (MQ=255) gcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGACATTTTCATATTGt > 1:33735403/1‑68 (MQ=255) gcATCAGGCAATGTTGCGCCTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGt < 1:56486595/68‑1 (MQ=255) cATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt < 1:12486317/44‑1 (MQ=255) aTCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg > 1:18200210‑M2/1‑7 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:44706775‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:26378608‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:51438075‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:23732702‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:41610608‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:5196169‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:16189629‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:33110996‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:37878007‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:53248726‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacg < 1:36474913‑M2/67‑62 (MQ=255) tCAGGCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacc < 1:17378998‑M2/67‑62 (MQ=255) tCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAg > 1:3203464/1‑67 (MQ=255) ggCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgc < 1:35962645‑M2/68‑66 (MQ=255) ggCctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgc < 1:40034308‑M2/68‑66 (MQ=255) gCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTATCATATTGTAGACAAc > 1:55004157/1‑68 (MQ=255) cctacacgttcactgcaatctcttggatttgaagggttttcatgccggataaggcgttcacgccgca > 1:34163380‑M2/1‑1 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:28173671‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:10436750‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:9208568‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:11112105‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:8554688‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:8239405‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:15159894‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:6090745‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:58019199‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:24647028‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:26941948‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca > 1:34612912‑M2/1‑1 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca > 1:37097869‑M2/1‑1 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:43781420‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:50905970‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgca < 1:45729681‑M2/67‑67 (MQ=255) cctacacgttcactgcaatctattggatttgaagggttttcatgccgcataaggcgttcacgccgca < 1:46952746‑M2/67‑67 (MQ=255) cctacacgatcactgcaatctattggatttgcagggttctcatgccggataaggcggtcacgccgca > 1:39541142‑M2/1‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:48130791/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:15844767/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa < 1:11846312/66‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc < 1:56039675/67‑1 (MQ=255) cAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc < 1:32617807/67‑1 (MQ=255) | CATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACG > CP009273/1546357‑1546491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |