| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1823129 | 342 (0.490) | 26 (0.040) | 11/94 | NT | 7.8% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 331 (0.560) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
Only 100 of 796 total aligned reads displayed.
CCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT > CP009273/1823062‑1823196 | cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc > 1:31233150/1‑68 (MQ=255) cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc < 1:17035698/68‑1 (MQ=255) aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGGAAGAAACGCATCGCCCTGCGcccc > 1:48589672/1‑67 (MQ=255) aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCCTCGCCCTGCGCCCCg > 1:9631650/1‑68 (MQ=255) aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc > 1:42395297/1‑67 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGc < 1:3697626/66‑1 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:15778096/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:17603519/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:8547650/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:30726265/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:24614005/67‑1 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:22923068/67‑1 (MQ=255) gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt < 1:4489452/68‑1 (MQ=255) cccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt > 1:4969092/1‑67 (MQ=255) ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTc > 1:30480169/1‑68 (MQ=255) cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc < 1:44017512/67‑1 (MQ=255) cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc < 1:58003002/67‑1 (MQ=255) cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc < 1:40984908/67‑1 (MQ=255) cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCa > 1:20754199/1‑68 (MQ=255) gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa < 1:57840600/68‑1 (MQ=255) gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa < 1:10480182/68‑1 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaa > 1:1636220‑M1/1‑50 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc < 1:32955452/68‑1 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc > 1:20361323/1‑68 (MQ=255) gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg > 1:14242898/1‑67 (MQ=255) gCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg < 1:26153777‑M2/67‑3 (MQ=255) tGACGGCAACCAGTCGAGCTAGAATCGCATCGCCCTGCGCGCCTCTTTTCAGCAATAAACGGCgggcg > 1:7906046‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:49301282‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc > 1:27407109‑M2/1‑63 (MQ=255) cggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAg > 1:45391907‑M1/31‑68 (MQ=255) cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcag > 1:14564651‑M2/1‑60 (MQ=255) cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca > 1:52262908‑M2/1‑60 (MQ=255) cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca > 1:54050086‑M2/1‑60 (MQ=255) ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg > 1:22098745‑M2/1‑59 (MQ=255) ccaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATACACGGCGGGCGCAGGt < 1:10006329/65‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:46916549/67‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:2130542/67‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:7287470/67‑1 (MQ=255) aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa > 1:27147661/1‑68 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:9156770/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:50932878/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:35500283/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc > 1:28477115/1‑68 (MQ=255) gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt > 1:39584506/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt < 1:53822684/67‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:51452203/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:33311837/1‑68 (MQ=255) gccggtcaacgctgcaCCTGCGCCCCGCGTTTCCGCAATAAACGGCGGGGGCCGGGGCAGCGGTGAcc < 1:24163376‑M1/52‑1 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg < 1:52624668/68‑1 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg < 1:31585661/67‑1 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg > 1:33869945/1‑67 (MQ=255) aGACACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:25187600/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:57560892/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:113887/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:6935364/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:55966740/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:13114651/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:41190435/68‑1 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcg > 1:3815690‑M2/1‑40 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGAc > 1:44480375/1‑61 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt > 1:29432806/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt < 1:50506686/68‑1 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt > 1:23828561/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtg < 1:27983114/67‑1 (MQ=255) aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg > 1:5655067/1‑68 (MQ=255) aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg > 1:26701798/1‑68 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:21791613/68‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:30042476/68‑1 (MQ=255) aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgctgcgtttcttcctcgtctgg > 1:32556448‑M1/1‑14 (MQ=255) aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg > 1:199100‑M1/1‑14 (MQ=255) aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCGGTGACaa > 1:38637032/1‑68 (MQ=255) aTCGCCCTGCGCCCCGCTTATCACCAAAAAACGGCGGGCCCAGGTGCAGCGTTCACCCCCTGTGACaa > 1:43508173/1‑68 (MQ=255) tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa > 1:56819828/1‑67 (MQ=255) gCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggtt > 1:1391165‑M1/1‑11 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAACg < 1:25871327‑M1/66‑1 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAACg < 1:53062833‑M1/66‑1 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCCGGCGCAGGTGCAGCGTTGACCGGCTGTGCCAAACg < 1:57137519‑M1/66‑1 (MQ=255) ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc < 1:3656092‑M1/68‑60 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:46268358‑M1/68‑1 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc > 1:3195919‑M1/1‑68 (MQ=255) CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg > 1:18619169‑M1/1‑68 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:25373978‑M1/1‑7 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:19117365‑M1/1‑7 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:23539866‑M1/1‑7 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:36298928‑M1/1‑5 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcaggcccatgcgtttcttgctcgtctggatgccgtca > 1:35987674‑M1/1‑5 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:48874371‑M1/65‑1 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCGGTGACAAACGCCg < 1:47599823‑M1/65‑1 (MQ=255) gcccgccgtttattgctgaaacgcggggcgcagggcgatgcgtgtcttgctcgtctggttgccgtca > 1:12546256‑M1/1‑4 (MQ=255) gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag < 1:47963716‑M1/68‑65 (MQ=255) gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:5495362‑M1/1‑4 (MQ=255) gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca < 1:1840251‑M1/67‑64 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:55447082‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:37602639‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:6221124‑M1/68‑1 (MQ=255) CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa < 1:54704249‑M1/68‑1 (MQ=255) ccgccgtttattgctgaaaagcggtgcgcagggcgatgcgtttcttgctcgtctggttgccgtcagc < 1:26444163‑M1/67‑66 (MQ=255) ccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagcc > 1:40247994‑M1/1‑2 (MQ=255) ccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagcc < 1:11950094‑M1/68‑67 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa < 1:4150843‑M1/68‑1 (MQ=255) | CCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT > CP009273/1823062‑1823196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |