New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129342 (0.490)26 (0.040) 11/94 NT 7.8% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 331 (0.560)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 680 total aligned reads displayed.

GGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC  >  CP009273/1823085‑1823217
                                                                 |                                                                   
ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                                                   >  1:3847601‑M2/1‑66 (MQ=255)
ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                                                   >  1:40247994‑M2/1‑66 (MQ=255)
  cagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACggcgggc                                                                 >  1:43573807‑M1/35‑68 (MQ=255)
  cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                  >  1:53069567‑M2/1‑64 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:28384619‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                                >  1:36298928‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggca                                                                >  1:39728682‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 <  1:9351953‑M2/67‑5 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:20688900‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:41042333‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:21898324‑M2/1‑63 (MQ=255)
   tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                 >  1:42368077‑M2/1‑63 (MQ=255)
     aCGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                              <  1:45102887‑M2/68‑8 (MQ=255)
      cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                              >  1:23539866‑M2/1‑60 (MQ=255)
       ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                            >  1:27278157‑M2/1‑59 (MQ=255)
         ccaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATACACGGCGGGCGCAGGt                                                           <  1:10006329/65‑1 (MQ=255)
         cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                           <  1:44553762/67‑1 (MQ=255)
         cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                           <  1:25680450/67‑1 (MQ=255)
           aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                                        >  1:19317292/1‑68 (MQ=255)
           aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                                        >  1:18333570/1‑68 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      >  1:48990747/1‑68 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      >  1:3012682/1‑68 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      <  1:54967348/68‑1 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      <  1:28742537/68‑1 (MQ=255)
             cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                      <  1:12208935/68‑1 (MQ=255)
               gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                    >  1:14312600/1‑68 (MQ=255)
                 ctagcAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCgggcgcagggcgatgcgtt                                                  >  1:26757788‑M2/3‑49 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCgggcgcagggcgatgcg                                                    >  1:30695850‑M2/1‑49 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:10442012/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:51452203/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:56251228/1‑68 (MQ=255)
                 cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                  >  1:25330988/1‑68 (MQ=255)
                  gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                                                 <  1:2603342/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                             <  1:57801526/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                             <  1:54671971/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                             <  1:16620817/68‑1 (MQ=255)
                      aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                                              >  1:21483222/1‑67 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:46934149/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:57560892/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:41190435/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:46113637/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:33051852/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:26276166/68‑1 (MQ=255)
                       aGAAACGCATCGCCCTGCGCCCCGCTTTGCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                            <  1:50947468/68‑1 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                         >  1:7021238/1‑68 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                         >  1:24789352/1‑68 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                         <  1:50506686/68‑1 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtg                                          <  1:32513420/67‑1 (MQ=255)
                          aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACAGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                         >  1:7435987/1‑68 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:55629600/68‑1 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:43882281/68‑1 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:36637451/68‑1 (MQ=255)
                            cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                       <  1:43047651/68‑1 (MQ=255)
                              gctgcaCCTGCGCCCCGCTTTTCAGCAATTAACGGGGGGCGCAGGTGCCGCGTTGCCCGGCTGTGACa                                     <  1:26456743‑M1/62‑1 (MQ=255)
                                tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa                                    >  1:56819828/1‑67 (MQ=255)
                                   cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                 >  1:22450274/1‑67 (MQ=255)
                                   cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                 >  1:33840512/1‑67 (MQ=255)
                                   aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGGTGTGACTAACg                                 <  1:8877202‑M1/66‑1 (MQ=255)
                                    ccTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgcc                               >  1:11687053‑M2/1‑30 (MQ=255)
                                    CCTGCGCCCCGCTTTTGAGCAATAAACGGCGGGCGCAGGTGCAGGGTTGGCCGGCTGTGACAAACGcc                               <  1:52455400‑M1/68‑1 (MQ=255)
                                    CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                               >  1:44202959‑M1/1‑68 (MQ=255)
                                     CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              >  1:18619169‑M1/1‑68 (MQ=255)
                                      TGCGCCCCGCTTT‑CAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                            >  1:1754447‑M1/1‑68 (MQ=255)
                                       GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                            >  1:48232856‑M1/1‑68 (MQ=255)
                                        CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                              <  1:15803363‑M1/65‑1 (MQ=255)
                                        CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCGGTGACAAACGCCg                              <  1:47599823‑M1/65‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:6221124‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          >  1:35758232‑M1/1‑68 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:7864067‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:57989509‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:14043084‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:5205709‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          <  1:53712487‑M1/68‑1 (MQ=255)
                                         GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACAGGCTGTGACAAACGCCGACTg                          <  1:13515764‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCTATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                          >  1:13037705‑M1/1‑67 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:24007849‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:487525‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:14855050‑M1/68‑1 (MQ=255)
                                          CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         <  1:22853411‑M1/68‑1 (MQ=255)
                                           CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                         >  1:33315575‑M1/1‑67 (MQ=255)
                                            CCGCTTTTCAGCAATAAACGGCGGGTGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAt                       >  1:54240641‑M1/1‑68 (MQ=255)
                                             cGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATg                      <  1:27667937/68‑1 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     <  1:8353244/68‑1 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     <  1:46514549/68‑1 (MQ=255)
                                              gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                     >  1:31426518/1‑68 (MQ=255)
                                                ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                    <  1:5272449/67‑1 (MQ=255)
                                                ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                    <  1:37111691/67‑1 (MQ=255)
                                                 tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                  <  1:49458159/68‑1 (MQ=255)
                                                      gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg             >  1:37873705/1‑68 (MQ=255)
                                                      gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg             >  1:11071411/1‑68 (MQ=255)
                                                        aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc           >  1:35342973/1‑68 (MQ=255)
                                                        aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc           >  1:31196985/1‑68 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:57103919/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:6739485/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:34870610/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:41478846/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc       >  1:29458389/1‑67 (MQ=255)
                                                             aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcg      <  1:47948331/68‑1 (MQ=255)
                                                              cggcggGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgc     <  1:20087846/68‑1 (MQ=255)
                                                                gcgggcgCAGGTGCAGCGTTGACCGGCTCTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg    >  1:38865381/1‑67 (MQ=255)
                                                                 |                                                                   
GGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC  >  CP009273/1823085‑1823217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.