| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1995529 | NA (NA) | 3 (0.000) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1995540 | NA (NA) | noncoding (92/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 818 total aligned reads displayed.
TAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACC > CP009273/1995462‑1995596 | tAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAT > 1:38898902‑M1/1‑68 (MQ=255) cGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc < 1:8342140/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc > 1:53339816/1‑68 (MQ=255) ccTCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:51793958/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:48646379/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:50077399/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:22252610/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:47337665/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:16136629/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:56353397/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:800177/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:6875518/68‑1 (MQ=255) ccGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCa < 1:26021788‑M2/68‑2 (MQ=255) ccGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCa > 1:33934313‑M2/1‑67 (MQ=255) cGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCa < 1:42408439‑M2/67‑2 (MQ=255) cTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcag > 1:46001690‑M2/1‑62 (MQ=255) cTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcag < 1:15572076‑M2/67‑6 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:28048964/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:12698028/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:35885789/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:44854645/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:10012148/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:52540813/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:14203392/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:47805352/1‑68 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATgcgctgcgcttatcaggcctacaagt > 1:20283783‑M1/1‑42 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc > 1:10508897/1‑68 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc > 1:46620477/1‑68 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc < 1:30817759/68‑1 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGAGCATCAGGCAATTTGGc > 1:21330859/1‑68 (MQ=255) aaaTTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTg > 1:44241828/1‑67 (MQ=255) aaaTTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGc < 1:12123618/68‑1 (MQ=255) aaTTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGcc < 1:52799902/68‑1 (MQ=255) ttCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGt < 1:33439748/68‑1 (MQ=255) ttCAATAAATTGCAATTCAACTTGCAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGt < 1:16628481/68‑1 (MQ=255) tCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTc > 1:43382909/1‑68 (MQ=255) cAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCa < 1:34978416/68‑1 (MQ=255) cAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCa < 1:7032944/68‑1 (MQ=255) aaTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg < 1:5580473/68‑1 (MQ=255) aaTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg < 1:39922718/68‑1 (MQ=255) aTAAATTGCATTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg > 1:45491266/1‑67 (MQ=255) aaaTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtc > 1:28788607/1‑67 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:11516814/68‑1 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:55131989/68‑1 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:22994026/68‑1 (MQ=255) gCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt > 1:32897566/1‑68 (MQ=255) gCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt > 1:34626613/1‑68 (MQ=255) aaTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTaa < 1:40070489/68‑1 (MQ=255) aTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAAt < 1:50754676/68‑1 (MQ=255) tCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCa > 1:40576550/1‑68 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGTGTTGCCGTCAGTCTCAGTTAATCAgg < 1:41288679/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:41807780/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:13980461/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:38246761/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:54751462/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGGCTCAGTTAATCAgg < 1:36867425/68‑1 (MQ=255) aCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGt < 1:4910903/68‑1 (MQ=255) cTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGtt > 1:54237682/1‑68 (MQ=255) ttGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGtt > 1:51028948/1‑67 (MQ=255) tGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:51438636/50‑1 (MQ=255) gTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACa < 1:36428596/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCGGTCAGTCTCAGTTAATCAGGTTACAAc < 1:20866166/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:43192568/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:9456258/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:30244610/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:7505996/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:17599288/68‑1 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:27287048/1‑68 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:25294744/1‑68 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:35599979/1‑68 (MQ=255) cgtGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:5958522/65‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg < 1:19791502/66‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:32037688/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:6539225/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:31590606/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:49635680/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:8923896/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:13295004/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:2652891/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:53678388/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:14709557/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTCAATCAGGTTACAACGAt > 1:10912444/1‑68 (MQ=255) cTGATgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtagg < 1:56128023‑M1/68‑64 (MQ=255) cTGATgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtagg < 1:24397812‑M1/68‑64 (MQ=255) cTGATgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtagg < 1:42026032‑M1/68‑64 (MQ=255) cTGATgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtag < 1:21785050‑M1/67‑63 (MQ=255) cTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAtt > 1:14987175/1‑68 (MQ=255) tGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTa > 1:57733362/1‑68 (MQ=255) tgcgctgcggttatcaggcctacaagttgaatttcaatttattgaatttgcacatttttgtaggccg < 1:13074990‑M1/67‑67 (MQ=255) tgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtaggccgg < 1:18102769‑M1/68‑68 (MQ=255) tgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtaggccgg < 1:29709405‑M1/68‑68 (MQ=255) tgcgctgcgcttatcaggcctacaagttgaattgcaatttattgaatttgcacatttttgtaggccgg < 1:32528074‑M1/68‑68 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:2408671/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:23730391/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:18825399/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:13784736/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:37417699/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:17092764/1‑67 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:42797072/1‑67 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:57314641/1‑67 (MQ=255) | TAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACC > CP009273/1995462‑1995596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |