| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1995529 | NA (NA) | 3 (0.000) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 1995540 | NA (NA) | noncoding (92/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 860 total aligned reads displayed.
TCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGA > CP009273/1995473‑1995606 | tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:15294788/68‑1 (MQ=255)tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:36185659/68‑1 (MQ=255)tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:42431289/1‑68 (MQ=255)tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:47575665/68‑1 (MQ=255)tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:46910506/68‑1 (MQ=255) cGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCa < 1:56028962‑M2/67‑2 (MQ=255) ccTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcag < 1:24397812‑M2/68‑6 (MQ=255) ccTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcag < 1:14418653‑M2/68‑6 (MQ=255) ccTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACGTGTAGGCCTGATAAGCGCAGCGCatcag < 1:16623960‑M2/68‑6 (MQ=255) cTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCTGCGCatcag < 1:9584236‑M2/67‑6 (MQ=255) cTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcag > 1:30982803‑M2/1‑62 (MQ=255) tACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcaggc > 1:52605391‑M2/1‑61 (MQ=255) tACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCatcaggc > 1:6047416‑M2/1‑61 (MQ=255) cAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaa < 1:4157120/68‑1 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:4955081/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:35273616/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:10421433/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:10012148/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:29728903/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:3046405/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:35679967/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:11336053/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:48783760/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGACCTGATAAGCGCAGCGCAACAGGCATTTTg > 1:51665669/1‑68 (MQ=21) aaaTTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGc < 1:27469194/68‑1 (MQ=255) ttCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGt < 1:9258409/68‑1 (MQ=255) ttCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGt < 1:26251864/68‑1 (MQ=255) tCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTc > 1:43382909/1‑68 (MQ=255) aaTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg < 1:13555815/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:13281400/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:8060025/68‑1 (MQ=255) aaaTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtc > 1:12978325/1‑67 (MQ=255) aaaTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtc > 1:52239543/1‑67 (MQ=255) aaaTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtc > 1:44645694/1‑67 (MQ=255) aaaTTGCAATTCAAATTGTAGGCCTGATAAGCGCATCGCATCAGGCAATTTTGCGTTTCCGTCAGtc > 1:17340180/1‑67 (MQ=18) aaTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtctc > 1:49846540/1‑68 (MQ=255) aTTGCAATTCTACTTGTCGTCCAGATCAGCGCTGAGCATCAGGCAATTTGGCGTTGCCGTCAGtctga < 1:51158023/68‑3 (MQ=21) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:5090760/68‑1 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:8885869/68‑1 (MQ=255) tGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGt < 1:4020230/68‑1 (MQ=255) gCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt < 1:13966617/68‑1 (MQ=255) gCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGtt > 1:32897566/1‑68 (MQ=255) aaTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTaa < 1:7583575/68‑1 (MQ=255) tCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCa > 1:42735565/1‑68 (MQ=255) tCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCa > 1:54551215/1‑68 (MQ=255) cAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAg < 1:11876701/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:37088828/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:24075070/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:46450654/68‑1 (MQ=255) aCTTGTAGGCCTGATAAGCGCAGCGCatcaggcctacaagttgaattgcaatttattgaatttgcaca > 1:20283783‑M2/1‑26 (MQ=255) aCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGt > 1:48180465/1‑68 (MQ=255) ttGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGGGTTGCCGTCAGTCTCAGTTAATCAGGtt > 1:17693595/1‑67 (MQ=255) ttGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAGTCAGGtt > 1:34364993/1‑67 (MQ=255) gTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACa > 1:18994662/1‑68 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:36464050/1‑68 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:25294744/1‑68 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:31686726/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg < 1:21783705/66‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg < 1:19791502/66‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:7017019/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:21309649/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:50461219/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:10900463/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:32037727/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:53678388/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:22961773/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:55640859/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:56516765/1‑68 (MQ=255) cTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAtt > 1:14800795/1‑68 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTAGAACGATTAAc > 1:28207202/1‑67 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:5325566/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:23730391/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:39361515/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:57162214/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:7131601/1‑67 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:41989916/1‑67 (MQ=255) aaGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:40751352/1‑66 (MQ=255) agcgcagcgcATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:25740307/1‑65 (MQ=255) agcgcagcgcATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:37804257/1‑65 (MQ=255) agcgcagcgcATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCt < 1:26922295/68‑1 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:22458711/1‑58 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:45783050/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:45354705/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:12349777/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:5416214/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:8307360/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:38580820/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:15938378/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:28943657/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:33615376/1‑68 (MQ=255) gcagcgcaTCAGGCAATTTGGCGTTGCCCACACTCTCAGTTAATCAGGTTACAACGATTAACCCTgca > 1:18216206/1‑68 (MQ=38) gcagcgcaTAAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGATAAAACGATAAAcccaga > 1:20910557/1‑64 (MQ=37) agcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgcag < 1:6579718/67‑1 (MQ=255) agcgcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgcag < 1:44033111/67‑1 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgcagc < 1:40011656/65‑1 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCaga > 1:16991408/1‑68 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCaga > 1:57895270/1‑68 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCaga > 1:34836975/1‑68 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCaga > 1:55059068/1‑68 (MQ=255) gcaTCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCaga > 1:4310879/1‑68 (MQ=255) | TCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGA > CP009273/1995473‑1995606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |