New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292644 (0.920)44 (0.070) 11/98 NT 6.8% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 636 (1.040)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 1051 total aligned reads displayed.

TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358
                                                                  |                                                                  
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:25494691/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:1717917/1‑67 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCa                                                             >  1:7393925/1‑67 (MQ=255)
        gCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           >  1:49045403/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:10689551/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:3326609/1‑68 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          <  1:39850227/67‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:14744340/68‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:5619151/68‑1 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGt                                                         <  1:10001856/68‑1 (MQ=255)
           tGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTc                                                        >  1:38483452/1‑68 (MQ=255)
             aCCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCa                                                       >  1:44886126/1‑67 (MQ=255)
             aCCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCa                                                       >  1:2223047/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:14418639/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:4314033/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:23700360/1‑67 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:18600029/1‑66 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:26092572/1‑66 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:242855/68‑1 (MQ=255)
                   gtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgc                                                 <  1:55737990/67‑1 (MQ=255)
                   gtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACct                                                   >  1:16944931/1‑65 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGTCCCGGCGtgcgctgcgaggagggtgacgatgc                                           >  1:9601800‑M1/1‑43 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTGAAGGTGCTGGCa                                            >  1:56532318/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:1639894/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:53051403/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:28463780/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:51270537/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:45950963/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:36288660/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:6096097/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:7909458/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:8965277/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCCCGCGGCATCGTCAACCTGATGGcc                                            >  1:26615319/1‑66 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCAGTAATGACCCGGCGggcggggccagcaggttgccgatg                                            >  1:52306706‑M1/1‑43 (MQ=255)
                        gACCGAAATAGACGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:44063043/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:35194762/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:34398457/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:33632561/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:29759992/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          <  1:19130220/67‑1 (MQ=255)
                                 aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                  <  1:27924857‑M2/68‑6 (MQ=255)
                                   tCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCTCCGCAcgcaggg                                <  1:53746574‑M2/68‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccggg                                >  1:21098296‑M1/1‑31 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:24619841‑M2/67‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:41529184‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:40888784‑M2/67‑8 (MQ=255)
                                        aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcatt                           >  1:40158954‑M2/1‑56 (MQ=255)
                                        aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCCGGCAGCGCAcgccgggtcatt                           >  1:19827022‑M2/1‑56 (MQ=255)
                                         tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAAt                          <  1:29050382/68‑1 (MQ=255)
                                           aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                        <  1:57388096/68‑1 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:46961199/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:56875535‑M2/1‑51 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:30740183/1‑68 (MQ=255)
                                               gCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGga                    >  1:11076865/1‑68 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                  <  1:37190064/68‑1 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   <  1:8641703/67‑1 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcag                 >  1:36577791‑M2/1‑46 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:12844073/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:42776191/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:47850983/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:32594622/1‑68 (MQ=255)
                                                   cTGAAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                >  1:50931829‑M2/1‑45 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:50518533/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:21781479/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:31986102/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:48504323/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:46462856/68‑1 (MQ=255)
                                                       aaTGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtctttacagaagcaggttat            >  1:43597085‑M1/1‑12 (MQ=255)
                                                       aaTGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttat            >  1:42558781‑M1/1‑12 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgctg            <  1:5006777/68‑1 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:4545536/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:52610318/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:20202068/1‑67 (MQ=255)
                                                         tGACCCGGCGtgcgctgccagcaggttgacgctgccgcgcgccgggtcattacagaagcaggtgatg           >  1:22961999‑M1/1‑10 (MQ=255)
                                                         tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg          >  1:20616457/1‑68 (MQ=255)
                                                          gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         <  1:51459544/68‑1 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:47531457‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:39127806‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:27077009‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:14078824‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:41935215‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:54455515‑M1/1‑7 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:11822361/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:17741875/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:27541634/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:30025450/1‑66 (MQ=255)
                                                              cGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgact     <  1:31354011‑M1/68‑64 (MQ=255)
                                                              cGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgact     <  1:49404377‑M1/68‑64 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:24021829/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:15415926/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:22516999/68‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:53369006/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:55029596/1‑67 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:12171924/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:674942/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:3593930/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:15876794/67‑1 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:13482987‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:44456288‑M1/67‑66 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:3791205‑M1/67‑66 (MQ=255)
                                                                  |                                                                  
TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.