| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2694210 = | 449 (0.640) | 21 (0.040) | 8/90 | NT | 6.5% | coding (148/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | CP009273 | 2694239 = | 241 (0.430) | coding (119/381 nt) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 | |||||
Only 100 of 630 total aligned reads displayed.
GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 | ggtgatcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGa < 1:14090685‑M1/2‑1 (MQ=255) aCCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa > 1:22432430/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:30318405/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:40925706/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:20938234/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaaa > 1:10117583/1‑68 (MQ=255) ccATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGaa < 1:1787332/67‑1 (MQ=255) ccATTGCGGATCCCGGTGCAAAACGCTTTTGCTGCGGCTTCTTTCACACCAAAACGCATCTCCAGaaa > 1:50869565/1‑68 (MQ=255) aTTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAAc > 1:57607874/1‑68 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc < 1:52655492‑M1/6‑1 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc > 1:548275‑M1/62‑67 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc < 1:15304093‑M1/6‑1 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc > 1:6028054‑M1/62‑67 (MQ=255) tcgcccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAAc > 1:11991333‑M1/62‑67 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:51348473‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:19777165‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:25603412‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:24808393‑M1/9‑1 (MQ=255) cccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCa < 1:2615893‑M1/9‑1 (MQ=255) ggATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCTCCAGAAAACGCAcc > 1:55932348/1‑68 (MQ=255) ccgatccggtgatcgcctggcacgccgcgtattaagcgataacgaatgggctatctgGAAAACGCAcc > 1:5726052‑M1/58‑68 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:36154027/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:51602465/67‑1 (MQ=255) tCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCgg < 1:52103294/67‑1 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACCGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:54056814/1‑68 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:49374672/1‑68 (MQ=255) ccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtg > 1:15865583/1‑68 (MQ=255) ggTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggt < 1:27067299/68‑1 (MQ=255) ggTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggt < 1:34623870/68‑1 (MQ=255) ggTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggt < 1:33877351/68‑1 (MQ=255) gTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCtggtg > 1:57860600/1‑68 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTggtggt > 1:56784588/1‑68 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTggtggt > 1:54412476/1‑68 (MQ=255) gCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTggtggt > 1:46501770/1‑68 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:44727783/68‑1 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:13225136/68‑1 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:8983645/68‑1 (MQ=255) cAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGc < 1:19309901/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt > 1:50481715/1‑68 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:16002498/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:3674644/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:43265938/68‑1 (MQ=255) aaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGt < 1:25721236/68‑1 (MQ=255) aCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGtt < 1:40085554/68‑1 (MQ=255) aCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGtt > 1:38062725/1‑68 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:33053927/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:32554067/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt > 1:35139541/1‑68 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:44121526/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:46975726/68‑1 (MQ=255) cGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGGGCGttt < 1:17368682/68‑1 (MQ=255) cGCTTTTGCTGCCGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:48624403/68‑1 (MQ=255) cGCTTATGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt < 1:20425696/68‑1 (MQ=255) gCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt > 1:29303128/1‑67 (MQ=255) gCTTTTGCTGCGGCTTCTTACACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGttt > 1:18544742/1‑67 (MQ=255) ttttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTcc < 1:16997266/68‑1 (MQ=255) ttttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTcc < 1:42547904/68‑1 (MQ=255) tttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCa < 1:27761798/68‑1 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:1072943/68‑1 (MQ=255) ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAg < 1:31929250/68‑1 (MQ=255) gctgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGAt > 1:29004368/1‑68 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:7350348/1‑67 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:39033750/1‑67 (MQ=255) tgcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATa > 1:21570588/1‑67 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:47672828/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:37706030/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:43672496/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:41474869/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:32287312/68‑1 (MQ=255) gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:31609828/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:42823236/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:55176720/68‑1 (MQ=255) cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCg < 1:53245843/68‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGc < 1:35718626/59‑1 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt > 1:55582916/1‑68 (MQ=255) ttCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGtt > 1:28497842/1‑68 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:45725895/1‑68 (MQ=255) tCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTa > 1:12593869/1‑68 (MQ=255) cgataacgaatgggctatctgGAAAACGCACCGGCTGGTGGGGCGTTTTCCAGATAGCCCATTCGTTa < 1:27586170‑M1/47‑1 (MQ=255) cgataacgaatgggctatctgGAAAACGCACCGGCTGGGGGTGCGTTTTCCAGATAGCCCATTCGTTa < 1:39721937‑M1/47‑1 (MQ=255) acaGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:31148493/1‑68 (MQ=255) aGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:13642655/1‑66 (MQ=255) aGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATc > 1:7101467/1‑66 (MQ=255) gCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCt > 1:8334971/1‑68 (MQ=255) aaaaCGCTTCGCCAGAAAACGGACGGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTa > 1:56168456/1‑68 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCg < 1:3859503/64‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:3717279/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:45055745/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:50122516/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:944802/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:23694377/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:42101019/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:22030747/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGc < 1:14540096/65‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCt < 1:13093448/66‑1 (MQ=255) aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTATTCCAGATAGCCCATTCGTTATCGCTTa > 1:53371488/1‑68 (MQ=255) aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTaa < 1:40623889/68‑1 (MQ=255) gggctatctgGAAGACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc < 1:11320886‑M1/58‑1 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:23080097/1‑67 (MQ=255) gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATAc > 1:48066526/1‑67 (MQ=255) | GACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTG > CP009273/2694144‑2694275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |