| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2787742 = | 745 (1.060) | 62 (0.100) | 12/96 | NT | 9.8% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 503 (0.840) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
Only 100 of 985 total aligned reads displayed.
TGTCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCG > CP009273/2787676‑2787809 | tgtCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCggg > 1:51717456/1‑67 (MQ=255)tgtCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCggg > 1:42810446/1‑67 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccggataatcataaccaccagtag < 1:53566961‑M1/1‑1 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtag < 1:38539279‑M1/1‑1 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtag < 1:3754995‑M1/1‑1 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtag < 1:32955754‑M1/1‑1 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtag < 1:19838987‑M1/1‑1 (MQ=255)acgaaccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtaGc > 1:50756415‑M1/67‑68 (MQ=255) gtCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGc > 1:58026579/1‑67 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:9710222/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:57301867/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:52037156/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:37889456/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:31447820/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:22159318/1‑68 (MQ=255) cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg > 1:13771086/1‑68 (MQ=255) ccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtaGCCcggc < 1:33584095‑M1/7‑1 (MQ=255) aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc > 1:16901363/1‑68 (MQ=255) aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc > 1:27111289/1‑68 (MQ=255) aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc > 1:31728392/1‑68 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:56588946/68‑1 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:20975956/68‑1 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:9332142/68‑1 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:53228114/68‑1 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:53016147/68‑1 (MQ=255) ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg < 1:47674619/68‑1 (MQ=255) cggtatcgggcgtggcaaccgccatttccgccaacacccgcataatcataaccaccagtaGCCcggcg > 1:35043793‑M1/61‑68 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTGGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:3540612/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:49744838/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt > 1:3698643/1‑68 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt > 1:29500430/1‑68 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:4562410/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt > 1:14817833/1‑68 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt > 1:35913369/1‑68 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:12820492/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:18992411/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:55115034/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:12342634/68‑1 (MQ=255) gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt < 1:50389833/68‑1 (MQ=255) cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTa < 1:24493089/67‑1 (MQ=255) cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTa < 1:15803848/67‑1 (MQ=255) cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAt < 1:54053680/68‑1 (MQ=255) ggtggtATCGGGGCAAGTCTGTTTGTGGGTTCCAGCGTCGAGATGGCCGAAGCGGGCGCGGCGGTAtt < 1:34558927/68‑1 (MQ=255) ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt < 1:48748146/68‑1 (MQ=255) ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt < 1:6506884/68‑1 (MQ=255) ggTGTTATCGGCGCAAGTCTGTTGGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt < 1:22679099/68‑1 (MQ=255) tgtTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt > 1:3412447/1‑66 (MQ=255) tagcGGCGCCAGTCTGTTTGTCGGGTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:8933478/65‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:45950641/68‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:52564461/68‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:18454495/68‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:17321424/68‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg < 1:25318636/67‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg < 1:25905835/67‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg < 1:25023049/67‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg < 1:55741406/67‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg < 1:40418299/67‑1 (MQ=255) tATCGGCGCAAGTCTGTTTGGCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:23190289/68‑1 (MQ=255) aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg < 1:13201958/67‑1 (MQ=255) aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc < 1:26350101/68‑1 (MQ=255) aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc < 1:23544022/68‑1 (MQ=255) tCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg > 1:28780105/1‑66 (MQ=255) gcgcAAGTCTGTTTGTCGGTTCGAGCGTCGCCAACGCCGAAGCGGGCCCGGCGGTATTACTGGCCTa < 1:41991046/67‑1 (MQ=255) gcAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTa > 1:49317797/1‑65 (MQ=255) aGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGtt < 1:8577249/68‑1 (MQ=255) aGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGtt < 1:39001673/68‑1 (MQ=255) tGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGcc < 1:16341587/68‑1 (MQ=255) tGTTTGTCGGGTCCAGCGGCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGcc < 1:20352629/68‑1 (MQ=255) tccgccaacatccgcataatcataaccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCgg < 1:27702503‑M1/34‑1 (MQ=255) ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCggg < 1:57580715/68‑1 (MQ=255) ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCggg < 1:144664/68‑1 (MQ=255) ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCgg > 1:1128157/1‑67 (MQ=255) ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCgg > 1:8124707/1‑67 (MQ=255) ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTACGCCggg < 1:3019064/68‑1 (MQ=255) gTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCt < 1:7340943/68‑1 (MQ=255) gTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCt < 1:17907792/68‑1 (MQ=255) cGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc < 1:44574804/68‑1 (MQ=255) cGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc < 1:4359088/68‑1 (MQ=255) ccAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtg < 1:5136159/68‑1 (MQ=255) cAGCTTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTAACTGTTCGCCGGGCTACtggtgg < 1:1418298/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:48120661/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:28152658/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:7644472/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:46875751/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:44859131/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:40800070/68‑1 (MQ=255) cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg < 1:39292121/68‑1 (MQ=255) gTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGtt < 1:30743442/66‑1 (MQ=255) cGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATg < 1:39934584/67‑1 (MQ=255) gCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGAt < 1:45154246/68‑1 (MQ=255) atcataaccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGAt < 1:19400089‑M1/52‑1 (MQ=255) ccATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGAtt > 1:36410059/1‑68 (MQ=255) ccATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGAtt > 1:1539036/1‑68 (MQ=255) cataaccaccagtaGCCCGGGGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTTTGATTa < 1:21662790‑M1/54‑1 (MQ=255) cATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTa > 1:10098124/1‑68 (MQ=255) gCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCg > 1:32393894/1‑68 (MQ=255) ccaccagtaGCTCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCgg < 1:41292003‑M1/59‑1 (MQ=255) ccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCgg < 1:10663171‑M1/59‑1 (MQ=255) ccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGGTATGATTATGCgg < 1:54769054‑M1/59‑1 (MQ=255) aGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGc < 1:31951092‑M1/67‑1 (MQ=255) | TGTCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCG > CP009273/2787676‑2787809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |