| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 421 (0.600) | 45 (0.080) | 13/96 | NT | 8.6% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 600 (1.000) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 727 total aligned reads displayed.
TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 | ttAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTC > 1:2513570‑M1/1‑68 (MQ=255) tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCG > 1:35940130‑M1/1‑68 (MQ=255) tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGACGGATGTCG > 1:51033856‑M1/1‑68 (MQ=255) cggcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgc < 1:1121529‑M1/4‑1 (MQ=255) aTGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:21718954‑M1/1‑68 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:14428405‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:55125236‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:56310242‑M1/1‑67 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC < 1:29300441‑M1/68‑1 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:52443408‑M1/62‑67 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc < 1:5699040‑M1/8‑1 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCa > 1:28789933‑M1/1‑67 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:3645898‑M1/1‑65 (MQ=255) cGACGCAGGCTACACTCTCTACGGCTTACAATAGATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:5881971/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:24782735/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:20018359/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:32898819/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:2326737/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:3101007/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:30421316/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:54111574/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:41371197/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:42460550/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:10781546/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:42001549/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:7024941/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:12622723/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:40863418/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:18137648/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:44321319/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:23687543/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:25785391/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:40273164/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:31880421/66‑1 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttgt > 1:46280405/1‑68 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttgt < 1:35313230/68‑1 (MQ=255) aGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttg < 1:16011305/67‑1 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:43701759/1‑68 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:45605835/1‑68 (MQ=255) acacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg > 1:49506354/1‑68 (MQ=255) acacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg > 1:3331581/1‑68 (MQ=255) cacTCTCGACGCCTTAGAAAACATGTTTGACGTTGAGCCGGATGGCGGCGCGCTGGTGTATGGCGAgg < 1:21422349/68‑1 (MQ=255) cacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg < 1:8647441/67‑1 (MQ=255) cacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg < 1:22183980/67‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:13232719/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:48905027/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:44875454/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:37532675/68‑1 (MQ=255) ctctCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATAGCGAGGaa > 1:29864913/1‑68 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:34026517/1‑68 (MQ=255) aCGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataa > 1:56581106/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:4691582/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:26966406/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:19046411/1‑68 (MQ=255) cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAGGGCGAGGAAAaataat > 1:31580165/1‑68 (MQ=255) gCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaataat > 1:18664161/1‑67 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:55805780/1‑68 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:46691926/1‑68 (MQ=255) catACAAAACAAGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc < 1:36971752/65‑1 (MQ=255) cTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc < 1:13706575/67‑1 (MQ=255) ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGt < 1:30086581/68‑1 (MQ=255) aaaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttg > 1:48273642/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGGTGTCGGCGCGCggtattgatcaacaaaacgcattatttttgctc > 1:1553769‑M1/1‑35 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:10358546/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:7686824/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:34666696/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCggtattcgtgaacaaaacgcatgatttttccgcg > 1:26174402‑M1/1‑33 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:53104125/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:23951036/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:3949771/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGCTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:27538690/1‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:20804786/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:17297001/68‑1 (MQ=255) aattaactgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatga < 1:8944722‑M1/47‑1 (MQ=255) aattaactgcatcacctgttcCGGCGCGCTGGTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatga < 1:28321773‑M1/47‑1 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGaa > 1:50394720/1‑68 (MQ=255) ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAat < 1:4742314/68‑1 (MQ=255) gACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAata > 1:26653035/1‑67 (MQ=255) aCGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:45253466/1‑68 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:14147032‑M1/52‑1 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:25438677‑M1/52‑1 (MQ=255) ctgcatcacctgttcCGGCGCGCGGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGTTGAATATc < 1:12239758‑M1/52‑1 (MQ=255) cGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:39842771/1‑67 (MQ=255) cGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:1186512/1‑67 (MQ=255) gcatcacctgttcCGGCGCGCTGTTGTATGGGGAGGAAAAATAATGCGTTTTGTTGATGAATATcgc < 1:43281780‑M1/54‑1 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:1655873‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:14829936‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:4105596‑M2/1‑63 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:51588606‑M2/68‑8 (MQ=255) acctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCg < 1:10063676‑M1/60‑1 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:53679248‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:19511312‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:6530337‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc > 1:42826535‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:20612103/68‑1 (MQ=255) cGGATGTCGGCGCGCGGTTGTATGGCGAGGAAAAATAATGCGGTTTGTTGATGAATATCgcgcgcc > 1:24391770‑M2/1‑59 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:47627959/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:7286631/68‑1 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccg > 1:54678457‑M1/1‑8 (MQ=255) CGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGt > 1:38642399‑M1/1‑68 (MQ=255) | TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |