| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701790 = | 183 (0.260) | 16 (0.030) | 4/88 | NT | 12.0% | intergenic (‑725/+186) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701955 = | 91 (0.170) | intergenic (‑890/+21) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 317 total aligned reads displayed.
GTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCC > CP009273/3701723‑3701857 | gttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacg > 1:38597640‑M1/68‑68 (MQ=255)gttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacg > 1:15991671‑M1/68‑68 (MQ=255) ttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGa < 1:26651803‑M1/2‑1 (MQ=255) ttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGa < 1:45487820‑M1/2‑1 (MQ=255) ttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGa < 1:44971040‑M1/2‑1 (MQ=255) tcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGa > 1:37639649‑M1/66‑67 (MQ=255) tcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAg > 1:13995850‑M1/66‑68 (MQ=255) cgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGc < 1:34722916‑M1/4‑1 (MQ=255) gacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAg > 1:15250271‑M1/62‑67 (MQ=255) gacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAg < 1:15637324‑M1/6‑1 (MQ=255) acgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAgg > 1:10094912‑M1/61‑67 (MQ=255) acgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAgg > 1:41273211‑M1/61‑67 (MQ=255) acgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAg < 1:1692384‑M1/6‑1 (MQ=255) acgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAg < 1:46609768‑M1/6‑1 (MQ=255) acgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAg < 1:8131735‑M1/6‑1 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:42715393‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:43669915‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:52413156‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:34365646‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:32904453‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:9777033‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:23732459‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGc > 1:12645830‑M1/60‑67 (MQ=255) cgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGCt > 1:38406330‑M1/60‑68 (MQ=255) cgaagggggcggaagttcgaatcctctatcaccgaccaaaatcgaaaagcctgctcaacGAGCAGGc > 1:222375‑M1/60‑67 (MQ=255) gaaggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGCtt > 1:44726106‑M1/59‑68 (MQ=255) aggggtcggaggttcgaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGCttt > 1:57748719‑M1/57‑67 (MQ=255) gtaaacctctatcaccgaccaaattccaaaaccctgctcaccCAGCAGGCTTTTCGAATTTGGTCGGt > 1:56968429‑M1/43‑68 (MQ=255) cgaatcctctatcaccgaccaaattcgaaaagcctgcgcaacGAGCAGGCTTTTCGAATTTGGTCGGt > 1:25489079‑M1/43‑68 (MQ=255) cgaatcctctaacaccgaccaaattcgaaaagcctgctcaacGCGCAGGCTTTTCGAATTTGGTCGGt > 1:46441221‑M1/43‑68 (MQ=255) gaatcctctatcaccgaccaaattcgaaaagcctgctcaacGAGCAGGCTTTTCGAATTTGGTCGGTg > 1:28102630‑M1/42‑68 (MQ=255) caaacctctatcaccgaccaaattcgaaaaccctgctcaacGAGCAGGCTTTTCGAATTTGGTCGGt > 1:32539222‑M1/42‑67 (MQ=255) accgaccaaattcgaaaagcctgctcaacGAGCAGGCGTTTCGAATTTGGTCGGTGATAGaggagtc < 1:39010699‑M1/38‑4 (MQ=255) accgaccaaattcgaaaagcctgctaaacGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGAtt < 1:39544951‑M1/37‑1 (MQ=255) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:27222197/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:18983486/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:14272619/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:39856374/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:45309900/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:34917683/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:21385100/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:33150981/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:49216312/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:52929163/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:50928358/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:30755928/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:52710171/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:959409/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:48636567/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:54638288/67‑1 (MQ=11) cTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTc > 1:40354342/1‑68 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTc < 1:22431041/67‑1 (MQ=37) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:5506078/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:49973750/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc < 1:35618247/67‑1 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:621845/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc < 1:6730197/67‑1 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTACTCGcc > 1:56582275/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGGTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:43229838/1‑67 (MQ=255) aTGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:55385031/1‑68 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACtt < 1:14842764/68‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:47740764/1‑67 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCg > 1:19451029/1‑68 (MQ=255) aaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg < 1:25853188/68‑1 (MQ=255) aaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg < 1:30184208/68‑1 (MQ=255) aaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg > 1:28963778/1‑67 (MQ=255) aaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc > 1:11588709/1‑67 (MQ=255) aGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:14503772/1‑68 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:55194391/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:39102560/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:37278805/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:3166420/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:50511541/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:12292059/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:8830469/1‑67 (MQ=255) gCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc > 1:9138291/1‑67 (MQ=255) ccTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg > 1:2438357/1‑67 (MQ=255) ccTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg > 1:33709927/1‑67 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc < 1:261175/67‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:44384518/1‑67 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc < 1:18705492/67‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc < 1:20235711/67‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc < 1:33327363/67‑1 (MQ=255) cTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGGGGCTCGc < 1:40255938/67‑1 (MQ=255) tGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGccc < 1:22745803/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt < 1:17884569/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt < 1:42054937/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt < 1:47333232/68‑1 (MQ=255) gCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt < 1:7515522/68‑1 (MQ=255) gCTCGTTCAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt < 1:27960864/68‑1 (MQ=255) tCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGc > 1:35996263/1‑68 (MQ=255) tCGTTGAGCAGGCTTTTCGAATTTGGTCGGGGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGc > 1:8426298/1‑68 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCggg > 1:35416800/1‑67 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCggg < 1:13452082/67‑1 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTAGCCCTGCggg < 1:32429715/67‑1 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCGCGCCCTGCggg < 1:24646144/67‑1 (MQ=255) tGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGCCTCGCCCTGCggg < 1:54126389/67‑1 (MQ=255) tGAGCAGGCTTTTCGAATTTGGGCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCggg < 1:51564105/67‑1 (MQ=255) GAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGcc < 1:29508630‑M1/68‑1 (MQ=255) GAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGcc < 1:40659909‑M1/68‑1 (MQ=255) | GTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCC > CP009273/3701723‑3701857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |